Wall clock time and date at job start Sun Mar 29 2020 21:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46522 * 2 1 4 4 C 1.36934 * 120.00008 * 89.56795 * 3 2 1 5 5 H 1.08007 * 120.00332 * 33.64964 * 4 3 2 6 6 C 1.38809 * 120.00059 * 213.93259 * 4 3 2 7 7 N 1.31620 * 120.00074 * 23.01264 * 6 4 3 8 8 Si 1.86807 * 120.00070 * 203.01850 * 6 4 3 9 9 H 1.48499 * 109.47150 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47071 * 119.99853 * 8 6 4 11 11 H 1.48506 * 109.46960 * 239.99558 * 8 6 4 12 12 C 1.46495 * 120.00296 * 269.56193 * 3 2 1 13 13 C 1.50699 * 109.47385 * 270.00399 * 12 3 2 14 14 C 1.35352 * 126.75384 * 94.70655 * 13 12 3 15 15 N 1.35312 * 106.18087 * 179.85475 * 14 13 12 16 16 C 1.46495 * 125.87333 * 180.11835 * 15 14 13 17 17 N 1.28716 * 108.25617 * 0.41945 * 15 14 13 18 18 N 1.28631 * 110.18219 * 359.73474 * 17 15 14 19 19 H 1.08998 * 109.47515 * 299.99836 * 1 2 3 20 20 H 1.08995 * 109.47288 * 60.00361 * 1 2 3 21 21 H 1.09005 * 109.46628 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47515 * 240.00164 * 2 1 3 23 23 H 1.08995 * 109.47288 * 119.99639 * 2 1 3 24 24 H 0.97008 * 119.99849 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.46865 * 30.00253 * 12 3 2 26 26 H 1.09000 * 109.47205 * 150.00280 * 12 3 2 27 27 H 1.08000 * 126.90749 * 0.02562 * 14 13 12 28 28 H 1.08999 * 109.47345 * 270.32873 * 16 15 14 29 29 H 1.09000 * 109.46722 * 30.32927 * 16 15 14 30 30 H 1.09006 * 109.47078 * 150.32684 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2380 2.0298 1.1859 5 1 2.5858 1.4781 2.0468 6 6 2.0081 3.3953 1.2832 7 7 1.1831 3.9852 0.4442 8 14 2.8696 4.3957 2.6047 9 1 3.7381 3.5033 3.4138 10 1 3.6994 5.4488 1.9662 11 1 1.8558 5.0303 3.4850 12 6 2.2715 2.0687 -1.2686 13 6 3.6979 1.8310 -1.6929 14 6 4.1429 0.8686 -2.5342 15 7 5.4825 1.0367 -2.6245 16 6 6.3975 0.2232 -3.4289 17 7 5.8155 2.0303 -1.8770 18 7 4.7740 2.5258 -1.3075 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.0227 4.9395 0.5120 25 1 1.5961 1.6826 -2.0322 26 1 2.1035 3.1383 -1.1422 27 1 3.5480 0.1192 -3.0351 28 1 6.7534 -0.6184 -2.8348 29 1 5.8738 -0.1492 -4.3094 30 1 7.2460 0.8321 -3.7413 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230351013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:12 Heat of formation + Delta-G solvation = 121.853501 kcal Electronic energy + Delta-G solvation = -14063.808207 eV Core-core repulsion = 11704.550381 eV Total energy + Delta-G solvation = -2359.257826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.45058 -35.99368 -33.99881 -31.71096 -31.04262 -28.67439 -27.52457 -25.76874 -23.48564 -21.30332 -21.09748 -19.74676 -16.95497 -16.33420 -15.95567 -14.71407 -14.10719 -13.93909 -13.76581 -13.30380 -12.97062 -12.67995 -12.21417 -11.86723 -11.10407 -11.05157 -10.97147 -10.60046 -10.42980 -10.15611 -10.03107 -9.73713 -9.66381 -9.34606 -8.44262 -8.34170 -6.58784 -5.69918 -3.21466 2.23019 2.89885 3.42725 3.51754 3.60590 3.62925 4.64007 4.69866 5.05135 5.15457 5.28690 5.46078 5.65209 5.76781 6.04601 6.12051 6.24257 6.44214 6.52007 6.65739 6.91046 6.99648 7.07991 7.18349 7.29219 7.72979 7.92712 8.58925 9.25777 9.32330 9.91423 10.44242 11.32520 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.012022 C = 0.009239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.068657 B = 2328.519935 C = 3029.949015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 N -0.574 5.574 4 C -0.253 4.253 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.293 1.293 12 C 0.210 3.790 13 C 0.005 3.995 14 C -0.079 4.079 15 N -0.308 5.308 16 C 0.089 3.911 17 N -0.112 5.112 18 N -0.248 5.248 19 H 0.056 0.944 20 H 0.044 0.956 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.040 0.960 24 H 0.254 0.746 25 H 0.043 0.957 26 H 0.118 0.882 27 H 0.178 0.822 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -8.553 -8.472 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.294 5.294 4 C -0.382 4.382 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.221 1.221 12 C 0.082 3.918 13 C -0.136 4.136 14 C -0.229 4.229 15 N -0.104 5.104 16 C -0.054 4.054 17 N -0.091 5.091 18 N -0.116 5.116 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.195 0.805 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.784 -7.541 -7.958 12.395 hybrid contribution -0.240 -0.371 0.092 0.451 sum 5.544 -7.912 -7.866 12.458 Atomic orbital electron populations 1.22273 0.99466 0.98327 1.02087 1.20854 0.92070 0.87342 0.98024 1.43779 1.73517 1.10039 1.02031 1.18992 1.38200 0.91304 0.89723 0.92301 1.24966 0.96860 0.98282 0.98059 1.69936 1.33452 1.10242 1.39323 0.86323 0.79372 0.80433 0.81164 1.20307 1.21103 1.22053 1.19464 0.82713 1.03360 0.86301 1.23940 1.00088 0.93605 0.95947 1.23373 0.84377 1.06251 1.08897 1.47150 1.07142 1.23513 1.32567 1.22027 0.93675 0.94950 0.94719 1.78242 1.23166 1.00840 1.06890 1.75129 0.95624 1.22845 1.17965 0.92521 0.93703 0.95138 0.95107 0.94156 0.93604 0.93846 0.86479 0.80521 0.90019 0.89110 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 37.16 0.38 -2.79 16 2 C 0.14 3.02 6.39 -4.04 -0.03 2.99 16 3 N -0.57 -14.47 2.43 -174.61 -0.43 -14.90 16 4 C -0.25 -7.14 9.48 -15.06 -0.14 -7.28 16 5 H 0.06 1.69 7.93 -52.48 -0.42 1.27 16 6 C 0.02 0.52 4.95 -17.43 -0.09 0.44 16 7 N -0.89 -25.89 11.31 55.49 0.63 -25.26 16 8 Si 0.90 23.09 29.61 -169.99 -5.03 18.06 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 C 0.21 5.05 5.85 -5.20 -0.03 5.02 16 13 C 0.00 0.11 6.83 -82.78 -0.57 -0.46 16 14 C -0.08 -1.38 11.55 -17.05 -0.20 -1.58 16 15 N -0.31 -5.12 3.74 -68.06 -0.25 -5.38 16 16 C 0.09 0.85 11.39 59.84 0.68 1.53 16 17 N -0.11 -2.38 13.16 60.35 0.79 -1.58 16 18 N -0.25 -6.11 12.41 33.29 0.41 -5.69 16 19 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 20 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 23 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 26 H 0.12 3.25 5.31 -51.93 -0.28 2.97 16 27 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 263.32 15.07 3.97 3.97 Total: -1.00 -33.53 263.32 -3.94 -37.47 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -4.04 Total: -4.57 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 0.01 Total: -2.12 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 1.16 Total: -52.81 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.53 -3.94 -37.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230351013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.325 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds