Wall clock time and date at job start Sun Mar 29 2020 21:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46522 * 2 1 4 4 C 1.36934 * 120.00008 * 89.56795 * 3 2 1 5 5 H 1.08007 * 120.00332 * 33.64964 * 4 3 2 6 6 C 1.38809 * 120.00059 * 213.93259 * 4 3 2 7 7 N 1.31620 * 120.00074 * 23.01264 * 6 4 3 8 8 Si 1.86807 * 120.00070 * 203.01850 * 6 4 3 9 9 H 1.48499 * 109.47150 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47071 * 119.99853 * 8 6 4 11 11 H 1.48506 * 109.46960 * 239.99558 * 8 6 4 12 12 C 1.46495 * 120.00296 * 269.56193 * 3 2 1 13 13 C 1.50699 * 109.47385 * 270.00399 * 12 3 2 14 14 C 1.35352 * 126.75384 * 94.70655 * 13 12 3 15 15 N 1.35312 * 106.18087 * 179.85475 * 14 13 12 16 16 C 1.46495 * 125.87333 * 180.11835 * 15 14 13 17 17 N 1.28716 * 108.25617 * 0.41945 * 15 14 13 18 18 N 1.28631 * 110.18219 * 359.73474 * 17 15 14 19 19 H 1.08998 * 109.47515 * 299.99836 * 1 2 3 20 20 H 1.08995 * 109.47288 * 60.00361 * 1 2 3 21 21 H 1.09005 * 109.46628 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47515 * 240.00164 * 2 1 3 23 23 H 1.08995 * 109.47288 * 119.99639 * 2 1 3 24 24 H 0.97008 * 119.99849 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.46865 * 30.00253 * 12 3 2 26 26 H 1.09000 * 109.47205 * 150.00280 * 12 3 2 27 27 H 1.08000 * 126.90749 * 0.02562 * 14 13 12 28 28 H 1.08999 * 109.47345 * 270.32873 * 16 15 14 29 29 H 1.09000 * 109.46722 * 30.32927 * 16 15 14 30 30 H 1.09006 * 109.47078 * 150.32684 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2380 2.0298 1.1859 5 1 2.5858 1.4781 2.0468 6 6 2.0081 3.3953 1.2832 7 7 1.1831 3.9852 0.4442 8 14 2.8696 4.3957 2.6047 9 1 3.7381 3.5033 3.4138 10 1 3.6994 5.4488 1.9662 11 1 1.8558 5.0303 3.4850 12 6 2.2715 2.0687 -1.2686 13 6 3.6979 1.8310 -1.6929 14 6 4.1429 0.8686 -2.5342 15 7 5.4825 1.0367 -2.6245 16 6 6.3975 0.2232 -3.4289 17 7 5.8155 2.0303 -1.8770 18 7 4.7740 2.5258 -1.3075 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.0227 4.9395 0.5120 25 1 1.5961 1.6826 -2.0322 26 1 2.1035 3.1383 -1.1422 27 1 3.5480 0.1192 -3.0351 28 1 6.7534 -0.6184 -2.8348 29 1 5.8738 -0.1492 -4.3094 30 1 7.2460 0.8321 -3.7413 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230351013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:12 Heat of formation + Delta-G solvation = 98.327818 kcal Electronic energy + Delta-G solvation = -14064.828357 eV Core-core repulsion = 11704.550381 eV Total energy + Delta-G solvation = -2360.277976 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.92334 -37.82828 -35.33591 -33.73199 -32.62120 -30.39860 -28.65759 -27.61097 -25.34616 -22.71764 -22.70008 -21.45307 -18.79414 -17.76016 -17.31132 -16.71590 -15.79491 -15.62397 -15.49565 -14.76633 -14.14709 -13.89364 -13.80216 -13.34708 -13.10906 -12.86840 -12.54427 -12.50346 -12.26301 -12.11195 -11.88848 -11.48774 -11.36005 -10.76827 -10.48704 -9.92974 -8.60763 -7.81301 -5.34909 0.84236 1.41320 1.49572 1.54733 1.77367 1.82423 2.55115 3.31042 3.71062 3.88358 3.99268 4.33569 4.39852 4.50321 4.50782 4.65596 4.77859 4.88988 4.92482 5.11570 5.26146 5.36071 5.45008 5.63181 5.70454 5.84143 5.94366 6.50240 7.20452 7.79077 7.92673 8.38597 9.16567 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.012022 C = 0.009239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.068657 B = 2328.519935 C = 3029.949015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 N -0.589 5.589 4 C -0.255 4.255 5 H 0.046 0.954 6 C -0.025 4.025 7 N -0.908 5.908 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.285 1.285 12 C 0.216 3.784 13 C -0.033 4.033 14 C -0.046 4.046 15 N -0.291 5.291 16 C 0.073 3.927 17 N -0.138 5.138 18 N -0.311 5.311 19 H 0.023 0.977 20 H 0.040 0.960 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.035 0.965 24 H 0.250 0.750 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.228 0.772 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.209 -11.041 -10.155 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.014 3.986 3 N -0.310 5.310 4 C -0.386 4.386 5 H 0.064 0.936 6 C -0.222 4.222 7 N -0.553 5.553 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.224 1.224 11 H -0.212 1.212 12 C 0.088 3.912 13 C -0.174 4.174 14 C -0.198 4.198 15 N -0.086 5.086 16 C -0.066 4.066 17 N -0.117 5.117 18 N -0.177 5.177 19 H 0.043 0.957 20 H 0.059 0.941 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.244 0.756 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.362 -10.052 -9.651 15.319 hybrid contribution -0.329 0.250 0.484 0.636 sum 6.033 -9.803 -9.167 14.715 Atomic orbital electron populations 1.22124 0.98344 1.00256 1.00251 1.21027 0.92885 0.85321 0.99389 1.43970 1.74244 1.11333 1.01448 1.19076 1.37205 0.91660 0.90647 0.93631 1.25456 0.97804 0.99135 0.99822 1.70032 1.34665 1.09951 1.40626 0.85620 0.78539 0.79077 0.79643 1.20191 1.22354 1.21179 1.19180 0.84654 1.00973 0.86432 1.23690 0.99004 0.95987 0.98754 1.23850 0.84819 1.04815 1.06294 1.47651 1.07922 1.22159 1.30916 1.22660 0.93569 0.94783 0.95574 1.78109 1.22491 1.02739 1.08337 1.75041 0.97013 1.25271 1.20354 0.95733 0.94103 0.91227 0.91742 0.94634 0.94064 0.91542 0.90740 0.75561 0.87943 0.85019 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 10.24 71.98 0.74 -4.85 16 2 C 0.14 5.56 6.39 86.38 0.55 6.11 16 3 N -0.59 -29.55 2.43 -706.34 -1.72 -31.27 16 4 C -0.26 -14.68 9.48 84.03 0.80 -13.88 16 5 H 0.05 2.68 7.93 -2.91 -0.02 2.66 16 6 C -0.02 -1.44 4.95 84.86 0.42 -1.02 16 7 N -0.91 -54.64 11.31 21.65 0.24 -54.40 16 8 Si 0.94 48.76 29.61 68.60 2.03 50.79 16 9 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 C 0.22 10.33 5.85 85.63 0.50 10.84 16 13 C -0.03 -1.42 6.83 41.60 0.28 -1.14 16 14 C -0.05 -1.43 11.55 83.49 0.96 -0.47 16 15 N -0.29 -8.71 3.74 -369.24 -1.38 -10.10 16 16 C 0.07 1.05 11.39 127.77 1.46 2.51 16 17 N -0.14 -5.70 13.16 37.02 0.49 -5.22 16 18 N -0.31 -15.40 12.41 -48.60 -0.60 -16.01 16 19 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 22 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 23 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 24 H 0.25 14.63 8.31 -92.70 -0.77 13.85 16 25 H 0.07 2.76 8.07 -2.38 -0.02 2.74 16 26 H 0.07 4.26 5.31 -2.39 -0.01 4.25 16 27 H 0.23 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -76.48 263.32 5.89 -70.59 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: 1.12 Total: -2.48 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.71 Total: -1.91 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -2.97 Total: -116.99 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -76.48 5.89 -70.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230351013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.921 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds