Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34325 * 126.44374 * 2 1 4 4 N 1.34485 * 107.66767 * 179.97438 * 3 2 1 5 5 C 1.30250 * 108.70025 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.62069 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46887 * 90.02528 * 6 5 4 8 8 C 1.46899 * 111.00048 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47176 * 325.00252 * 8 7 6 10 10 C 1.53004 * 109.47382 * 84.99745 * 8 7 6 11 11 C 1.50701 * 109.47401 * 205.00019 * 8 7 6 12 12 H 1.07999 * 119.99783 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00086 * 179.97438 * 11 8 7 14 14 N 1.31516 * 120.00349 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00123 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47074 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47295 * 119.99990 * 15 13 11 18 18 H 1.48495 * 109.47168 * 239.99981 * 15 13 11 19 19 O 1.33974 * 108.76338 * 359.97438 * 5 4 3 20 20 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47052 * 300.02532 * 1 2 3 22 22 H 1.09003 * 109.46787 * 60.02079 * 1 2 3 23 23 H 1.08000 * 126.17016 * 359.96108 * 3 2 1 24 24 H 1.08994 * 109.47329 * 210.02264 * 6 5 4 25 25 H 1.08998 * 109.47114 * 330.03077 * 6 5 4 26 26 H 1.00905 * 111.00326 * 303.95472 * 7 6 5 27 27 H 1.09000 * 109.46551 * 60.00125 * 10 8 7 28 28 H 1.08994 * 109.47406 * 179.97438 * 10 8 7 29 29 H 1.08995 * 109.47033 * 300.00529 * 10 8 7 30 30 H 0.96999 * 120.00575 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 7 5.1976 -1.8205 1.3853 8 6 6.3905 -2.6769 1.4245 9 1 6.3604 -3.3801 0.5922 10 6 7.6455 -1.8087 1.3134 11 6 6.4198 -3.4383 2.7247 12 1 5.6314 -3.2996 3.4496 13 6 7.4532 -4.3120 2.9887 14 7 8.4131 -4.4813 2.1058 15 14 7.4892 -5.2563 4.6001 16 1 6.3030 -4.8903 5.4149 17 1 7.4671 -6.7145 4.3199 18 1 8.7265 -4.9145 5.3466 19 8 2.3074 -1.0841 0.0002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5142 0.8897 22 1 -0.3633 0.5135 -0.8902 23 1 1.9822 2.1112 -0.0006 24 1 4.5763 -2.4686 -0.5140 25 1 5.6149 -1.0230 -0.5129 26 1 5.3484 -0.9671 1.9021 27 1 7.6755 -1.1055 2.1457 28 1 8.5306 -2.4441 1.3430 29 1 7.6242 -1.2580 0.3731 30 1 9.1403 -5.0957 2.2917 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231653011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = 17.913826 kcal Electronic energy + Delta-G solvation = -13444.576511 eV Core-core repulsion = 11048.518771 eV Total energy + Delta-G solvation = -2396.057740 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.05744 -36.24523 -34.44636 -33.06772 -32.01963 -29.44306 -26.69358 -25.17598 -24.18927 -21.95371 -20.72868 -20.26951 -17.04528 -16.50491 -16.07226 -14.81509 -14.63911 -14.14503 -14.00825 -13.42589 -13.13542 -13.01463 -12.46966 -12.32024 -11.74577 -11.57485 -11.09212 -10.94988 -10.80648 -10.53982 -10.29377 -10.17349 -9.97107 -9.06707 -8.48443 -8.38422 -7.40166 -6.00569 -4.03925 1.64437 2.86137 2.93325 3.31954 3.39629 3.45487 4.31266 4.45203 4.85679 5.08559 5.21229 5.29915 5.31393 5.39573 5.54339 5.83389 5.88874 6.08471 6.24836 6.51451 6.66393 6.82697 7.02757 7.24467 7.70720 7.83469 7.99068 8.19156 8.40988 8.51779 9.02971 9.61367 11.06608 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052826 B = 0.006371 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.913056 B = 4393.559052 C = 4718.599181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.063 4.063 3 C -0.046 4.046 4 N -0.490 5.490 5 C 0.216 3.784 6 C 0.149 3.851 7 N -0.679 5.679 8 C 0.212 3.788 9 H 0.038 0.962 10 C -0.171 4.171 11 C -0.495 4.495 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 O -0.193 6.193 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.178 0.822 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.334 0.666 27 H 0.030 0.970 28 H 0.091 0.909 29 H 0.008 0.992 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 7.653 -4.789 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 C -0.185 4.185 4 N -0.220 5.220 5 C 0.009 3.991 6 C 0.019 3.981 7 N -0.311 5.311 8 C 0.105 3.895 9 H 0.056 0.944 10 C -0.230 4.230 11 C -0.534 4.534 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 O -0.079 6.079 20 H 0.095 0.905 21 H 0.104 0.896 22 H 0.102 0.898 23 H 0.195 0.805 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.027 0.973 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.211 7.315 -4.750 14.204 hybrid contribution 0.187 -0.142 0.586 0.631 sum -11.024 7.172 -4.163 13.795 Atomic orbital electron populations 1.20203 0.84435 1.04137 1.03376 1.23404 0.95023 0.84987 1.08272 1.22987 0.88126 1.00069 1.07269 1.70464 1.22861 1.09514 1.19135 1.26601 0.84344 0.89962 0.98195 1.20356 0.86802 0.95936 0.95002 1.60915 1.41254 1.20987 1.07909 1.19250 0.82055 0.89945 0.98255 0.94398 1.22450 1.04798 0.99486 0.96290 1.21150 1.07567 1.22521 1.02178 0.91795 1.24940 0.95490 0.96946 0.97104 1.69887 1.11964 1.37050 1.34762 0.86418 0.77842 0.79519 0.83490 1.19743 1.21095 1.21163 1.84444 1.18017 1.36232 1.69227 0.90494 0.89634 0.89771 0.80451 0.88758 0.91526 0.84910 0.95088 0.89015 0.97320 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.43 36.01 0.38 -0.19 16 2 C -0.06 -0.88 7.39 -35.69 -0.26 -1.14 16 3 C -0.05 -0.66 11.80 -17.77 -0.21 -0.87 16 4 N -0.49 -8.75 11.29 -11.10 -0.13 -8.88 16 5 C 0.22 3.93 7.85 -12.95 -0.10 3.83 16 6 C 0.15 2.79 6.11 -4.98 -0.03 2.76 16 7 N -0.68 -14.82 6.22 -109.22 -0.68 -15.50 16 8 C 0.21 5.29 2.57 -68.86 -0.18 5.11 16 9 H 0.04 1.01 7.80 -51.93 -0.41 0.61 16 10 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 11 C -0.50 -13.71 8.84 -34.44 -0.30 -14.01 16 12 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 14 N -0.90 -25.43 11.32 55.43 0.63 -24.81 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 O -0.19 -3.35 10.78 5.34 0.06 -3.29 16 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.18 1.93 8.06 -52.49 -0.42 1.50 16 24 H 0.09 1.68 8.06 -51.93 -0.42 1.26 16 25 H 0.07 1.20 7.43 -51.93 -0.39 0.81 16 26 H 0.33 7.19 8.46 -39.29 -0.33 6.86 16 27 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.17 7.45 -51.93 -0.39 -0.22 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 261.72 15.07 3.94 3.94 Total: -1.00 -30.30 261.72 -5.57 -35.87 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.90 Total: 3.03 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.47 Total: -6.83 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.18 Total: -49.19 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.06 Total: -3.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.30 -5.57 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231653011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.786 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds