Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34325 * 126.44374 * 2 1 4 4 N 1.34485 * 107.66767 * 179.97438 * 3 2 1 5 5 C 1.30250 * 108.70025 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.62069 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46887 * 90.02528 * 6 5 4 8 8 C 1.46899 * 111.00048 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47176 * 325.00252 * 8 7 6 10 10 C 1.53004 * 109.47382 * 84.99745 * 8 7 6 11 11 C 1.50701 * 109.47401 * 205.00019 * 8 7 6 12 12 H 1.07999 * 119.99783 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00086 * 179.97438 * 11 8 7 14 14 N 1.31516 * 120.00349 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00123 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47074 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47295 * 119.99990 * 15 13 11 18 18 H 1.48495 * 109.47168 * 239.99981 * 15 13 11 19 19 O 1.33974 * 108.76338 * 359.97438 * 5 4 3 20 20 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47052 * 300.02532 * 1 2 3 22 22 H 1.09003 * 109.46787 * 60.02079 * 1 2 3 23 23 H 1.08000 * 126.17016 * 359.96108 * 3 2 1 24 24 H 1.08994 * 109.47329 * 210.02264 * 6 5 4 25 25 H 1.08998 * 109.47114 * 330.03077 * 6 5 4 26 26 H 1.00905 * 111.00326 * 303.95472 * 7 6 5 27 27 H 1.09000 * 109.46551 * 60.00125 * 10 8 7 28 28 H 1.08994 * 109.47406 * 179.97438 * 10 8 7 29 29 H 1.08995 * 109.47033 * 300.00529 * 10 8 7 30 30 H 0.96999 * 120.00575 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 7 5.1976 -1.8205 1.3853 8 6 6.3905 -2.6769 1.4245 9 1 6.3604 -3.3801 0.5922 10 6 7.6455 -1.8087 1.3134 11 6 6.4198 -3.4383 2.7247 12 1 5.6314 -3.2996 3.4496 13 6 7.4532 -4.3120 2.9887 14 7 8.4131 -4.4813 2.1058 15 14 7.4892 -5.2563 4.6001 16 1 6.3030 -4.8903 5.4149 17 1 7.4671 -6.7145 4.3199 18 1 8.7265 -4.9145 5.3466 19 8 2.3074 -1.0841 0.0002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5142 0.8897 22 1 -0.3633 0.5135 -0.8902 23 1 1.9822 2.1112 -0.0006 24 1 4.5763 -2.4686 -0.5140 25 1 5.6149 -1.0230 -0.5129 26 1 5.3484 -0.9671 1.9021 27 1 7.6755 -1.1055 2.1457 28 1 8.5306 -2.4441 1.3430 29 1 7.6242 -1.2580 0.3731 30 1 9.1403 -5.0957 2.2917 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231653011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = -5.162624 kcal Electronic energy + Delta-G solvation = -13445.577181 eV Core-core repulsion = 11048.518771 eV Total energy + Delta-G solvation = -2397.058410 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.28973 -38.03257 -35.73956 -34.80646 -33.33313 -31.08843 -28.07052 -27.23203 -25.57441 -23.18730 -22.20923 -21.99878 -18.72011 -17.78756 -17.73981 -16.73802 -16.06432 -15.56193 -15.44782 -14.93465 -14.46846 -13.97945 -13.85612 -13.57897 -13.37088 -13.14712 -12.86278 -12.73916 -12.47190 -12.31348 -12.17931 -11.94520 -11.54807 -11.09709 -10.49222 -9.64098 -9.15106 -8.10563 -6.21609 0.43745 1.43244 1.45064 1.57113 1.65051 1.75230 2.44950 3.07833 3.18269 3.69692 3.86975 4.10220 4.21177 4.41049 4.56128 4.69042 4.72553 4.74155 4.89767 5.04104 5.09097 5.21766 5.31904 5.37480 5.68340 5.77029 6.21159 6.51819 6.60191 6.76825 6.89726 7.47750 8.95306 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052826 B = 0.006371 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.913056 B = 4393.559052 C = 4718.599181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.054 4.054 3 C -0.063 4.063 4 N -0.505 5.505 5 C 0.187 3.813 6 C 0.156 3.844 7 N -0.683 5.683 8 C 0.217 3.783 9 H 0.016 0.984 10 C -0.158 4.158 11 C -0.517 4.517 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.962 3.038 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.279 1.279 19 O -0.211 6.211 20 H 0.079 0.921 21 H 0.108 0.892 22 H 0.113 0.887 23 H 0.213 0.787 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.334 0.666 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 8.420 -4.557 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C -0.201 4.201 4 N -0.236 5.236 5 C -0.019 4.019 6 C 0.026 3.974 7 N -0.315 5.315 8 C 0.109 3.891 9 H 0.034 0.966 10 C -0.218 4.218 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.788 3.212 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 O -0.098 6.098 20 H 0.098 0.902 21 H 0.126 0.874 22 H 0.131 0.869 23 H 0.229 0.771 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.152 0.848 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.730 8.085 -4.526 15.745 hybrid contribution 0.535 -0.304 0.465 0.772 sum -12.195 7.781 -4.061 15.025 Atomic orbital electron populations 1.20510 0.80577 1.05130 1.05797 1.24463 0.96957 0.83905 1.05376 1.23592 0.86943 1.01922 1.07667 1.70413 1.24965 1.09390 1.18789 1.26230 0.84541 0.90068 1.01059 1.20213 0.87650 0.96461 0.93062 1.60748 1.39684 1.20877 1.10185 1.19018 0.83680 0.90115 0.96292 0.96616 1.22260 1.03105 0.98948 0.97456 1.21409 1.07537 1.23535 1.03108 0.92938 1.25678 0.95101 0.97700 1.00201 1.69996 1.12318 1.37439 1.36238 0.85446 0.77864 0.78228 0.79682 1.19612 1.20556 1.20506 1.84434 1.18115 1.37812 1.69415 0.90237 0.87376 0.86902 0.77056 0.88588 0.90969 0.84846 0.95034 0.91478 0.95142 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.43 71.24 0.74 -0.14 16 2 C -0.05 -1.38 7.39 24.79 0.18 -1.20 16 3 C -0.06 -1.69 11.80 83.39 0.98 -0.71 16 4 N -0.50 -17.56 11.29 -303.83 -3.43 -20.99 16 5 C 0.19 6.77 7.85 88.34 0.69 7.46 16 6 C 0.16 5.87 6.11 85.56 0.52 6.39 16 7 N -0.68 -30.16 6.22 -499.46 -3.11 -33.26 16 8 C 0.22 10.99 2.57 44.17 0.11 11.11 16 9 H 0.02 0.87 7.80 -2.39 -0.02 0.85 16 10 C -0.16 -7.61 8.94 71.98 0.64 -6.97 16 11 C -0.52 -28.97 8.84 25.60 0.23 -28.75 16 12 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 13 C 0.01 0.65 5.30 84.65 0.45 1.10 16 14 N -0.92 -52.56 11.32 21.45 0.24 -52.31 16 15 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 O -0.21 -7.18 10.78 -3.79 -0.04 -7.22 16 20 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 22 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.21 3.90 8.06 -2.91 -0.02 3.88 16 24 H 0.10 3.50 8.06 -2.39 -0.02 3.48 16 25 H 0.07 2.60 7.43 -2.39 -0.02 2.58 16 26 H 0.33 14.52 8.46 -89.69 -0.76 13.76 16 27 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 29 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 30 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -64.83 261.72 0.63 -64.20 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.38 Total: 15.18 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 4.56 Total: -11.71 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -6.30 Total: -106.57 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.04 Total: -7.22 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.83 0.63 -64.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231653011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.038 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds