Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34324 * 126.43951 * 2 1 4 4 N 1.34487 * 107.66703 * 179.77150 * 3 2 1 5 5 C 1.30262 * 108.69876 * 0.41683 * 4 3 2 6 6 C 1.50696 * 125.61914 * 179.83982 * 5 4 3 7 7 N 1.46896 * 109.47170 * 89.69762 * 6 5 4 8 8 C 1.46899 * 111.00134 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47000 * 34.99725 * 8 7 6 10 10 C 1.53000 * 109.46598 * 275.00079 * 8 7 6 11 11 C 1.50702 * 109.47201 * 154.99985 * 8 7 6 12 12 H 1.07997 * 119.99924 * 5.37700 * 11 8 7 13 13 C 1.37881 * 119.99738 * 185.37158 * 11 8 7 14 14 N 1.31510 * 119.99867 * 185.16616 * 13 11 8 15 15 Si 1.86797 * 119.99999 * 5.16634 * 13 11 8 16 16 H 1.48503 * 109.47086 * 270.00046 * 15 13 11 17 17 H 1.48495 * 109.47175 * 29.99866 * 15 13 11 18 18 H 1.48497 * 109.46842 * 150.00101 * 15 13 11 19 19 O 1.33964 * 108.75774 * 359.58073 * 5 4 3 20 20 H 1.09004 * 109.46530 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46885 * 299.99720 * 1 2 3 22 22 H 1.08997 * 109.47009 * 59.99901 * 1 2 3 23 23 H 1.07997 * 126.16888 * 0.02562 * 3 2 1 24 24 H 1.09006 * 109.46957 * 329.69553 * 6 5 4 25 25 H 1.09004 * 109.47043 * 209.69832 * 6 5 4 26 26 H 1.00902 * 110.99856 * 56.04749 * 7 6 5 27 27 H 1.09008 * 109.47161 * 174.97896 * 10 8 7 28 28 H 1.09004 * 109.47188 * 294.97229 * 10 8 7 29 29 H 1.08995 * 109.47876 * 54.97875 * 10 8 7 30 30 H 0.97010 * 119.99945 * 355.00148 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6548 -0.0008 6 6 4.8005 -1.5340 -0.0014 7 7 5.1986 -1.8200 1.3834 8 6 6.3917 -2.6762 1.4220 9 1 7.0484 -2.4220 0.5901 10 6 5.9705 -4.1428 1.3095 11 6 7.1221 -2.4616 2.7225 12 1 6.6942 -1.8261 3.4837 13 6 8.3367 -3.0767 2.9406 14 7 8.9257 -2.9724 4.1118 15 14 9.1456 -4.0583 1.5725 16 1 8.6973 -5.4721 1.6460 17 1 8.7610 -3.4848 0.2579 18 1 10.6213 -3.9983 1.7262 19 8 2.3076 -1.0840 -0.0005 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.9821 2.1112 0.0004 24 1 5.6147 -1.0230 -0.5154 25 1 4.5762 -2.4687 -0.5154 26 1 4.4380 -2.2357 1.8998 27 1 6.8585 -4.7722 1.2483 28 1 5.3873 -4.4217 2.1871 29 1 5.3659 -4.2796 0.4130 30 1 8.5427 -2.4041 4.7984 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231653013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = 20.155119 kcal Electronic energy + Delta-G solvation = -13504.028211 eV Core-core repulsion = 11108.067661 eV Total energy + Delta-G solvation = -2395.960550 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.15608 -36.51738 -34.54516 -33.10670 -32.12149 -30.03154 -27.03471 -24.93607 -24.12484 -22.10796 -20.81068 -20.06867 -17.62510 -16.69649 -16.60131 -15.01437 -14.69862 -14.51306 -13.71677 -13.50326 -13.31750 -13.19027 -12.50838 -12.42607 -12.12928 -11.89155 -11.40857 -11.29903 -11.10470 -10.55189 -10.29691 -10.02675 -9.73683 -8.78547 -8.57837 -8.40781 -7.61830 -6.38793 -4.02580 1.53923 2.75754 2.86490 3.35556 3.42533 3.57535 4.23653 4.48984 4.77647 4.99200 5.07372 5.16142 5.22209 5.32797 5.44750 5.61763 5.77990 5.99894 6.13384 6.18283 6.28235 6.44052 6.47775 6.68165 7.07903 7.62916 7.94461 8.12762 8.19123 8.47679 9.01709 9.66978 11.01223 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.063104 B = 0.006491 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.602367 B = 4312.490784 C = 4410.535784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.064 4.064 3 C -0.043 4.043 4 N -0.470 5.470 5 C 0.207 3.793 6 C 0.151 3.849 7 N -0.665 5.665 8 C 0.183 3.817 9 H 0.039 0.961 10 C -0.183 4.183 11 C -0.574 4.574 12 H 0.064 0.936 13 C 0.024 3.976 14 N -0.915 5.915 15 Si 1.056 2.944 16 H -0.285 1.285 17 H -0.281 1.281 18 H -0.289 1.289 19 O -0.205 6.205 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.180 0.820 24 H 0.110 0.890 25 H 0.050 0.950 26 H 0.333 0.667 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 2.775 -10.234 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 C -0.182 4.182 4 N -0.198 5.198 5 C 0.000 4.000 6 C 0.021 3.979 7 N -0.296 5.296 8 C 0.075 3.925 9 H 0.056 0.944 10 C -0.242 4.242 11 C -0.613 4.613 12 H 0.082 0.918 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.886 3.114 16 H -0.213 1.213 17 H -0.207 1.207 18 H -0.216 1.216 19 O -0.092 6.092 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.197 0.803 24 H 0.128 0.872 25 H 0.068 0.932 26 H 0.150 0.850 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.521 2.724 -10.506 16.570 hybrid contribution -2.409 -0.195 0.189 2.424 sum -14.930 2.530 -10.317 18.323 Atomic orbital electron populations 1.20210 0.84332 1.04044 1.03523 1.23388 0.94927 0.84901 1.08483 1.23081 0.88145 1.00180 1.06824 1.70486 1.22442 1.09419 1.17491 1.26510 0.83745 0.90512 0.99242 1.20427 0.88197 0.94705 0.94600 1.60772 1.08598 1.52164 1.08091 1.19769 0.87569 0.85813 0.99380 0.94365 1.22838 1.00631 1.01610 0.99114 1.22023 1.05778 1.32640 1.00878 0.91796 1.25721 0.94463 0.97549 1.00272 1.70796 1.43054 1.37323 1.03897 0.83840 0.76184 0.76052 0.75277 1.21250 1.20694 1.21566 1.84393 1.18212 1.36678 1.69965 0.90610 0.89566 0.89665 0.80311 0.87213 0.93203 0.84977 0.93054 0.92767 0.95583 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.43 36.01 0.38 -0.14 16 2 C -0.06 -0.85 7.39 -35.69 -0.26 -1.11 16 3 C -0.04 -0.63 11.80 -17.77 -0.21 -0.84 16 4 N -0.47 -8.54 11.30 -11.10 -0.13 -8.66 16 5 C 0.21 3.65 7.86 -12.95 -0.10 3.55 16 6 C 0.15 2.67 6.11 -4.98 -0.03 2.64 16 7 N -0.66 -14.09 6.22 -109.22 -0.68 -14.77 16 8 C 0.18 4.30 2.15 -68.86 -0.15 4.16 16 9 H 0.04 0.91 6.30 -51.93 -0.33 0.59 16 10 C -0.18 -3.83 8.77 37.16 0.33 -3.50 16 11 C -0.57 -16.32 9.20 -34.44 -0.32 -16.64 16 12 H 0.06 2.00 8.04 -52.49 -0.42 1.58 16 13 C 0.02 0.69 5.43 -17.82 -0.10 0.59 16 14 N -0.92 -28.50 13.70 55.43 0.76 -27.74 16 15 Si 1.06 25.35 25.29 -169.99 -4.30 21.05 16 16 H -0.29 -6.48 6.81 56.52 0.38 -6.10 16 17 H -0.28 -6.21 6.36 56.52 0.36 -5.85 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 O -0.21 -3.30 10.77 5.37 0.06 -3.25 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 24 H 0.11 1.92 8.06 -51.93 -0.42 1.50 16 25 H 0.05 0.78 7.36 -51.93 -0.38 0.40 16 26 H 0.33 6.78 8.47 -39.29 -0.33 6.44 16 27 H 0.05 1.10 4.40 -51.92 -0.23 0.87 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.45 7.35 -51.93 -0.38 0.07 16 30 H 0.27 8.35 8.72 -40.82 -0.36 7.99 16 LS Contribution 256.02 15.07 3.86 3.86 Total: -1.00 -32.55 256.02 -4.71 -37.26 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.82 Total: 3.53 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.47 Total: -11.29 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.05 Total: -51.16 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.30 Total: 21.05 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.55 -4.71 -37.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231653013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.419 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds