Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34324 * 126.43951 * 2 1 4 4 N 1.34487 * 107.66703 * 179.77150 * 3 2 1 5 5 C 1.30262 * 108.69876 * 0.41683 * 4 3 2 6 6 C 1.50696 * 125.61914 * 179.83982 * 5 4 3 7 7 N 1.46896 * 109.47170 * 89.69762 * 6 5 4 8 8 C 1.46899 * 111.00134 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47000 * 34.99725 * 8 7 6 10 10 C 1.53000 * 109.46598 * 275.00079 * 8 7 6 11 11 C 1.50702 * 109.47201 * 154.99985 * 8 7 6 12 12 H 1.07997 * 119.99924 * 5.37700 * 11 8 7 13 13 C 1.37881 * 119.99738 * 185.37158 * 11 8 7 14 14 N 1.31510 * 119.99867 * 185.16616 * 13 11 8 15 15 Si 1.86797 * 119.99999 * 5.16634 * 13 11 8 16 16 H 1.48503 * 109.47086 * 270.00046 * 15 13 11 17 17 H 1.48495 * 109.47175 * 29.99866 * 15 13 11 18 18 H 1.48497 * 109.46842 * 150.00101 * 15 13 11 19 19 O 1.33964 * 108.75774 * 359.58073 * 5 4 3 20 20 H 1.09004 * 109.46530 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46885 * 299.99720 * 1 2 3 22 22 H 1.08997 * 109.47009 * 59.99901 * 1 2 3 23 23 H 1.07997 * 126.16888 * 0.02562 * 3 2 1 24 24 H 1.09006 * 109.46957 * 329.69553 * 6 5 4 25 25 H 1.09004 * 109.47043 * 209.69832 * 6 5 4 26 26 H 1.00902 * 110.99856 * 56.04749 * 7 6 5 27 27 H 1.09008 * 109.47161 * 174.97896 * 10 8 7 28 28 H 1.09004 * 109.47188 * 294.97229 * 10 8 7 29 29 H 1.08995 * 109.47876 * 54.97875 * 10 8 7 30 30 H 0.97010 * 119.99945 * 355.00148 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0051 5 6 3.5766 -0.6548 -0.0008 6 6 4.8005 -1.5340 -0.0014 7 7 5.1986 -1.8200 1.3834 8 6 6.3917 -2.6762 1.4220 9 1 7.0484 -2.4220 0.5901 10 6 5.9705 -4.1428 1.3095 11 6 7.1221 -2.4616 2.7225 12 1 6.6942 -1.8261 3.4837 13 6 8.3367 -3.0767 2.9406 14 7 8.9257 -2.9724 4.1118 15 14 9.1456 -4.0583 1.5725 16 1 8.6973 -5.4721 1.6460 17 1 8.7610 -3.4848 0.2579 18 1 10.6213 -3.9983 1.7262 19 8 2.3076 -1.0840 -0.0005 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.9821 2.1112 0.0004 24 1 5.6147 -1.0230 -0.5154 25 1 4.5762 -2.4687 -0.5154 26 1 4.4380 -2.2357 1.8998 27 1 6.8585 -4.7722 1.2483 28 1 5.3873 -4.4217 2.1871 29 1 5.3659 -4.2796 0.4130 30 1 8.5427 -2.4041 4.7984 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231653013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -7.051786 kcal Electronic energy + Delta-G solvation = -13505.207991 eV Core-core repulsion = 11108.067661 eV Total energy + Delta-G solvation = -2397.140330 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.32924 -38.21269 -35.77567 -34.87414 -33.49643 -31.58272 -28.29218 -26.79744 -25.56552 -23.27329 -22.02770 -21.96003 -19.70356 -17.94609 -17.84354 -16.53535 -16.38266 -15.66622 -15.41209 -14.85656 -14.51882 -14.08656 -13.95094 -13.76217 -13.63030 -13.25366 -13.10377 -13.07351 -12.41204 -12.33278 -11.81176 -11.55564 -11.51256 -10.91737 -10.60543 -9.68028 -9.27821 -8.67365 -6.34897 0.39220 1.44949 1.56732 1.61518 1.69576 1.72102 2.51135 3.06488 3.12422 3.52040 3.84476 4.04750 4.18263 4.34817 4.45369 4.52520 4.64444 4.68921 4.69648 4.72505 4.98339 5.04893 5.18070 5.31896 5.40064 5.75071 6.06133 6.28396 6.48215 6.69285 6.76643 7.45932 8.68700 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.063104 B = 0.006491 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.602367 B = 4312.490784 C = 4410.535784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.050 4.050 3 C -0.068 4.068 4 N -0.501 5.501 5 C 0.182 3.818 6 C 0.157 3.843 7 N -0.685 5.685 8 C 0.186 3.814 9 H 0.043 0.957 10 C -0.176 4.176 11 C -0.579 4.579 12 H 0.015 0.985 13 C -0.031 4.031 14 N -0.950 5.950 15 Si 1.096 2.904 16 H -0.260 1.260 17 H -0.247 1.247 18 H -0.295 1.295 19 O -0.213 6.213 20 H 0.082 0.918 21 H 0.106 0.894 22 H 0.112 0.888 23 H 0.208 0.792 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.335 0.665 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.572 2.083 -12.649 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C -0.206 4.206 4 N -0.231 5.231 5 C -0.025 4.025 6 C 0.028 3.972 7 N -0.317 5.317 8 C 0.077 3.923 9 H 0.061 0.939 10 C -0.235 4.235 11 C -0.618 4.618 12 H 0.033 0.967 13 C -0.227 4.227 14 N -0.587 5.587 15 Si 0.918 3.082 16 H -0.186 1.186 17 H -0.171 1.171 18 H -0.222 1.222 19 O -0.100 6.100 20 H 0.101 0.899 21 H 0.124 0.876 22 H 0.131 0.869 23 H 0.225 0.775 24 H 0.126 0.874 25 H 0.095 0.905 26 H 0.152 0.848 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.399 2.041 -12.928 19.459 hybrid contribution -2.015 0.176 0.990 2.252 sum -16.414 2.218 -11.938 20.417 Atomic orbital electron populations 1.20516 0.80389 1.05289 1.05753 1.24415 0.96843 0.83794 1.05225 1.23621 0.87091 1.02046 1.07843 1.70426 1.24809 1.10054 1.17812 1.26299 0.84315 0.90438 1.01431 1.20340 0.88550 0.95946 0.92405 1.60520 1.08254 1.51991 1.10898 1.19559 0.88308 0.88108 0.96338 0.93905 1.22669 1.01099 0.98955 1.00783 1.22265 1.06289 1.31090 1.02112 0.96704 1.27310 0.95296 0.98542 1.01514 1.70941 1.44032 1.38799 1.04949 0.83398 0.74900 0.76201 0.73701 1.18571 1.17073 1.22165 1.84389 1.17973 1.37738 1.69944 0.89864 0.87577 0.86929 0.77477 0.87443 0.90496 0.84764 0.93167 0.93498 0.91603 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.43 71.24 0.74 -0.03 16 2 C -0.05 -1.20 7.39 24.79 0.18 -1.02 16 3 C -0.07 -1.84 11.80 83.39 0.98 -0.86 16 4 N -0.50 -17.86 11.30 -303.83 -3.43 -21.30 16 5 C 0.18 6.22 7.86 88.34 0.69 6.92 16 6 C 0.16 5.32 6.11 85.56 0.52 5.84 16 7 N -0.68 -28.67 6.22 -499.47 -3.11 -31.78 16 8 C 0.19 8.52 2.15 44.17 0.09 8.62 16 9 H 0.04 1.94 6.30 -2.39 -0.02 1.93 16 10 C -0.18 -6.88 8.77 71.98 0.63 -6.25 16 11 C -0.58 -33.66 9.20 25.60 0.24 -33.42 16 12 H 0.01 0.97 8.04 -2.91 -0.02 0.95 16 13 C -0.03 -1.81 5.43 84.66 0.46 -1.35 16 14 N -0.95 -61.15 13.70 21.45 0.29 -60.86 16 15 Si 1.10 49.75 25.29 68.60 1.73 51.48 16 16 H -0.26 -10.74 6.81 99.48 0.68 -10.07 16 17 H -0.25 -9.77 6.36 99.48 0.63 -9.14 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 O -0.21 -6.49 10.77 -3.69 -0.04 -6.53 16 20 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 21 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.21 4.04 8.06 -2.91 -0.02 4.01 16 24 H 0.11 3.63 8.06 -2.38 -0.02 3.61 16 25 H 0.08 2.17 7.36 -2.39 -0.02 2.15 16 26 H 0.34 13.54 8.47 -89.69 -0.76 12.78 16 27 H 0.05 1.97 4.40 -2.38 -0.01 1.96 16 28 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.07 2.05 7.35 -2.39 -0.02 2.03 16 30 H 0.25 16.40 8.72 -92.70 -0.81 15.60 16 Total: -1.00 -73.29 256.02 0.24 -73.05 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.24 Total: 17.48 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 4.55 Total: -21.55 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -6.24 Total: -113.93 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.04 Total: -6.53 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.73 Total: 51.48 kcal Total: -73.29 0.24 -73.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231653013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.997 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds