Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34336 * 126.44581 * 2 1 4 4 N 1.34476 * 107.66964 * 179.76948 * 3 2 1 5 5 C 1.30261 * 108.70057 * 0.41711 * 4 3 2 6 6 C 1.50697 * 125.61777 * 179.83998 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.69742 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99765 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47051 * 60.00574 * 14 12 10 16 16 H 1.48501 * 109.46677 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47226 * 299.99990 * 14 12 10 18 18 O 1.33965 * 108.75961 * 359.58155 * 5 4 3 19 19 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46984 * 300.00090 * 1 2 3 21 21 H 1.08995 * 109.47052 * 60.00210 * 1 2 3 22 22 H 1.07996 * 126.16376 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.47558 * 329.69905 * 6 5 4 24 24 H 1.08998 * 109.47216 * 209.69567 * 6 5 4 25 25 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 26 26 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 27 27 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 28 28 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 29 29 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 30 30 H 0.97007 * 120.00038 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 7 5.1985 -1.8200 1.3836 8 6 6.3915 -2.6763 1.4222 9 6 6.7744 -2.9521 2.8777 10 6 7.9979 -3.8311 2.9173 11 1 8.4563 -4.1603 1.9966 12 6 8.5320 -4.2148 4.1291 13 7 7.9735 -3.8142 5.2503 14 14 10.0482 -5.3049 4.1782 15 1 11.1726 -4.6201 3.4913 16 1 10.4198 -5.5725 5.5908 17 1 9.7571 -6.5890 3.4917 18 8 2.3075 -1.0840 -0.0005 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.9822 2.1112 0.0004 23 1 5.6147 -1.0231 -0.5152 24 1 4.5761 -2.4687 -0.5152 25 1 4.4378 -2.2357 1.9000 26 1 6.1787 -3.6190 0.9180 27 1 7.2165 -2.1729 0.9183 28 1 6.9871 -2.0097 3.3822 29 1 5.9492 -3.4557 3.3812 30 1 8.3491 -4.0845 6.1029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231653651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -14.057414 kcal Electronic energy + Delta-G solvation = -13008.265365 eV Core-core repulsion = 10610.821248 eV Total energy + Delta-G solvation = -2397.444117 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.33146 -37.76287 -35.77207 -35.15007 -33.52536 -31.72415 -28.81727 -26.47893 -24.99520 -23.26329 -22.52661 -21.95485 -18.54430 -17.98194 -17.78813 -17.00114 -16.45239 -15.65260 -15.47121 -15.19648 -14.37972 -14.23335 -13.99857 -13.78842 -13.63496 -13.21507 -12.99374 -12.80364 -12.48091 -12.36611 -11.97098 -11.52604 -11.46080 -11.32503 -10.55398 -9.70380 -9.41496 -8.19312 -6.31253 0.38636 1.42340 1.45922 1.53619 1.60929 1.69405 2.42174 3.03691 3.14553 3.40206 3.84410 4.05523 4.17483 4.34268 4.45141 4.55446 4.60075 4.70339 4.72427 5.04339 5.04889 5.18809 5.32090 5.43030 5.63733 5.74792 6.02160 6.17058 6.34355 6.75060 6.85981 7.38329 8.92928 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.080363 B = 0.004703 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.335970 B = 5952.683057 C = 6047.791988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.049 4.049 3 C -0.067 4.067 4 N -0.497 5.497 5 C 0.179 3.821 6 C 0.160 3.840 7 N -0.697 5.697 8 C 0.086 3.914 9 C 0.029 3.971 10 C -0.545 4.545 11 H 0.066 0.934 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.265 1.265 18 O -0.215 6.215 19 H 0.081 0.919 20 H 0.106 0.894 21 H 0.112 0.888 22 H 0.209 0.791 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.340 0.660 26 H 0.035 0.965 27 H 0.069 0.931 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 5.560 -12.186 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C -0.205 4.205 4 N -0.227 5.227 5 C -0.028 4.028 6 C 0.031 3.969 7 N -0.329 5.329 8 C -0.042 4.042 9 C -0.008 4.008 10 C -0.583 4.583 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.189 1.189 18 O -0.102 6.102 19 H 0.100 0.900 20 H 0.125 0.875 21 H 0.131 0.869 22 H 0.226 0.774 23 H 0.135 0.865 24 H 0.095 0.905 25 H 0.158 0.842 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.085 6.443 -11.948 18.855 hybrid contribution -0.188 -1.531 0.302 1.572 sum -13.273 4.912 -11.646 18.328 Atomic orbital electron populations 1.20518 0.80551 1.05251 1.05774 1.24406 0.96820 0.83811 1.05140 1.23620 0.87101 1.02019 1.07748 1.70412 1.24731 1.09931 1.17667 1.26288 0.84346 0.90457 1.01705 1.20294 0.88824 0.96206 0.91605 1.60470 1.08802 1.51660 1.12000 1.21851 0.90854 0.93342 0.98185 1.18939 0.95066 0.94928 0.91897 1.21592 1.12686 1.31072 0.92962 0.91573 1.26008 1.00805 0.97823 0.95218 1.70115 1.42438 1.46760 0.98079 0.85439 0.78993 0.79113 0.77119 1.19087 1.21016 1.18944 1.84397 1.18093 1.37791 1.69923 0.89972 0.87532 0.86941 0.77411 0.86501 0.90492 0.84221 0.94707 0.91237 0.98951 0.99002 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.43 71.23 0.74 0.01 16 2 C -0.05 -1.11 7.39 24.79 0.18 -0.92 16 3 C -0.07 -1.67 11.80 83.40 0.98 -0.69 16 4 N -0.50 -16.29 11.29 -303.83 -3.43 -19.72 16 5 C 0.18 5.60 7.86 88.34 0.69 6.29 16 6 C 0.16 4.76 6.31 85.55 0.54 5.30 16 7 N -0.70 -25.75 6.49 -517.92 -3.36 -29.11 16 8 C 0.09 3.54 5.62 86.30 0.49 4.03 16 9 C 0.03 1.57 5.23 29.85 0.16 1.73 16 10 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 11 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 12 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 13 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 14 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 O -0.21 -6.17 10.78 -3.73 -0.04 -6.21 16 19 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 21 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.21 3.66 8.06 -2.91 -0.02 3.63 16 23 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.34 12.48 8.72 -89.69 -0.78 11.70 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -70.74 268.03 0.31 -70.44 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.35 Total: 10.38 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.48 Total: -14.64 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -6.51 Total: -106.23 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.04 Total: -6.21 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.74 0.31 -70.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231653651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.381 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds