Wall clock time and date at job start Sun Mar 29 2020 21:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 H 1.08993 * 109.46849 * 185.15843 * 3 2 1 5 5 C 1.50700 * 109.46889 * 305.16058 * 3 2 1 6 6 H 1.07997 * 119.99646 * 120.00361 * 5 3 2 7 7 C 1.37871 * 119.99795 * 299.99822 * 5 3 2 8 8 N 1.31509 * 120.00422 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99716 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47097 * 119.99897 * 9 7 5 12 12 H 1.48503 * 109.47150 * 239.99939 * 9 7 5 13 13 N 1.46907 * 109.46963 * 65.15975 * 3 2 1 14 14 C 1.46899 * 110.99559 * 85.89670 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.81821 * 14 13 3 16 16 C 1.35452 * 126.77720 * 89.71252 * 15 14 13 17 17 C 1.41376 * 103.98945 * 179.90649 * 16 15 14 18 18 N 1.30178 * 106.39083 * 0.35965 * 17 16 15 19 19 O 1.20913 * 111.60913 * 359.76687 * 18 17 16 20 20 H 1.09005 * 109.46951 * 174.84716 * 1 2 3 21 21 H 1.08999 * 109.47125 * 54.84992 * 1 2 3 22 22 H 1.08994 * 109.47122 * 294.84434 * 1 2 3 23 23 H 1.09003 * 109.46986 * 119.99938 * 2 1 3 24 24 H 1.09000 * 109.46828 * 239.99879 * 2 1 3 25 25 H 0.97004 * 120.00237 * 180.02562 * 8 7 5 26 26 H 1.00905 * 110.99734 * 321.94494 * 13 3 2 27 27 H 1.08995 * 109.47219 * 294.81652 * 14 13 3 28 28 H 1.08999 * 109.47280 * 54.82329 * 14 13 3 29 29 H 1.07999 * 128.00214 * 0.02562 * 16 15 14 30 30 H 1.07998 * 126.80427 * 180.09758 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6921 -2.6675 9 14 0.9130 2.6814 -3.8910 10 1 0.1266 3.8343 -3.3835 11 1 1.9962 3.1733 -4.7798 12 1 0.0210 1.7720 -4.6543 13 7 1.6547 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2830 2.6253 3.5442 16 6 1.4850 2.2210 4.5612 17 6 1.4802 3.3206 5.4499 18 7 2.2300 4.2354 4.9063 19 8 2.6845 3.8676 3.8479 20 1 -0.3633 -1.0236 -0.0923 21 1 -0.3633 0.5916 -0.8403 22 1 -0.3633 0.4318 0.9325 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 2.5621 0.3877 -3.5748 26 1 0.7319 1.8103 1.5467 27 1 2.6480 0.7729 2.5494 28 1 3.6323 2.1359 1.9649 29 1 0.9726 1.2764 4.6693 30 1 0.9549 3.3897 6.3909 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231896530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:20 Heat of formation + Delta-G solvation = 57.562162 kcal Electronic energy + Delta-G solvation = -13761.814050 eV Core-core repulsion = 11367.475591 eV Total energy + Delta-G solvation = -2394.338459 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.63814 -36.81274 -33.81289 -33.19293 -31.54615 -29.98469 -26.77911 -24.60454 -23.29019 -23.20284 -21.05466 -19.42135 -17.29396 -17.22709 -16.00531 -15.02583 -14.84052 -14.41959 -13.63486 -13.42549 -13.10810 -12.77375 -12.54402 -11.90403 -11.63576 -11.12309 -10.95734 -10.75341 -10.56822 -10.26327 -10.06237 -9.95165 -9.65178 -9.18702 -9.04117 -8.39274 -7.41009 -6.02306 -4.03867 1.72294 2.46963 3.30209 3.37520 3.38852 3.44387 4.42070 4.53224 4.81425 5.24415 5.29947 5.42210 5.48892 5.71759 5.90671 6.03183 6.23219 6.27355 6.30429 6.49208 6.80483 7.13858 7.17389 7.44913 7.60833 7.82587 8.17430 8.37463 8.48200 8.50337 9.01935 9.60083 11.04836 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046255 B = 0.007452 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.194508 B = 3756.539049 C = 4026.990020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.490 4.490 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.129 3.871 15 C 0.006 3.994 16 C -0.249 4.249 17 C -0.015 4.015 18 N -0.376 5.376 19 O 0.102 5.898 20 H 0.024 0.976 21 H 0.070 0.930 22 H 0.027 0.973 23 H 0.012 0.988 24 H 0.095 0.905 25 H 0.259 0.741 26 H 0.332 0.668 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.167 0.833 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 -0.967 10.359 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.529 4.529 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.311 5.311 14 C -0.001 4.001 15 C -0.059 4.059 16 C -0.272 4.272 17 C -0.193 4.193 18 N -0.080 5.080 19 O 0.037 5.963 20 H 0.044 0.956 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.030 0.970 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.185 0.815 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.865 0.796 10.382 10.449 hybrid contribution -1.056 -1.388 -0.507 1.816 sum -1.920 -0.592 9.876 10.078 Atomic orbital electron populations 1.21612 0.97587 0.98834 1.00851 1.22137 0.95146 1.00880 1.00480 1.19292 0.96345 0.88675 0.84816 0.94472 1.21077 1.30669 1.11602 0.89511 0.91818 1.24898 0.95479 0.95150 0.98752 1.69877 1.38927 1.24009 1.20740 0.86500 0.78987 0.79893 0.82424 1.19710 1.21110 1.21208 1.60843 1.03544 1.63691 1.03014 1.20440 0.99082 0.94187 0.86404 1.24867 0.96967 0.85643 0.98427 1.22543 1.06099 1.02692 0.95843 1.24956 1.00991 0.90848 1.02514 1.73863 1.13759 1.23630 0.96741 1.84825 1.54973 1.27728 1.28759 0.95637 0.91113 0.95412 0.96966 0.88638 0.93076 0.84997 0.92506 0.89055 0.81541 0.79721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.40 37.16 0.35 -2.30 16 2 C -0.15 -3.22 5.51 -26.73 -0.15 -3.37 16 3 C 0.22 5.04 2.33 -68.86 -0.16 4.88 16 4 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 5 C -0.49 -12.86 7.25 -34.44 -0.25 -13.11 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -24.52 11.38 55.43 0.63 -23.89 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.59 6.19 -109.22 -0.68 -14.27 16 14 C 0.13 2.15 6.07 -4.97 -0.03 2.12 16 15 C 0.01 0.09 7.05 -35.30 -0.25 -0.16 16 16 C -0.25 -3.35 11.09 -39.38 -0.44 -3.79 16 17 C -0.01 -0.20 12.17 -17.06 -0.21 -0.40 16 18 N -0.38 -6.17 12.07 30.35 0.37 -5.80 16 19 O 0.10 1.76 11.20 17.17 0.19 1.96 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 22 H 0.03 0.49 6.63 -51.93 -0.34 0.15 16 23 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 24 H 0.10 2.38 6.23 -51.93 -0.32 2.06 16 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.33 6.33 6.69 -39.29 -0.26 6.07 16 27 H 0.06 0.86 7.53 -51.93 -0.39 0.47 16 28 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 29 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.19 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 255.31 15.07 3.85 3.85 Total: -1.00 -27.82 255.31 -5.58 -33.40 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.69 Total: 3.50 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.23 Total: -14.69 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.32 Total: -43.95 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: 0.19 Total: 1.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.82 -5.58 -33.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231896530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.958 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds