Wall clock time and date at job start Sun Mar 29 2020 21:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 H 1.08993 * 109.46849 * 185.15843 * 3 2 1 5 5 C 1.50700 * 109.46889 * 305.16058 * 3 2 1 6 6 H 1.07997 * 119.99646 * 120.00361 * 5 3 2 7 7 C 1.37871 * 119.99795 * 299.99822 * 5 3 2 8 8 N 1.31509 * 120.00422 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99716 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47097 * 119.99897 * 9 7 5 12 12 H 1.48503 * 109.47150 * 239.99939 * 9 7 5 13 13 N 1.46907 * 109.46963 * 65.15975 * 3 2 1 14 14 C 1.46899 * 110.99559 * 85.89670 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.81821 * 14 13 3 16 16 C 1.35452 * 126.77720 * 89.71252 * 15 14 13 17 17 C 1.41376 * 103.98945 * 179.90649 * 16 15 14 18 18 N 1.30178 * 106.39083 * 0.35965 * 17 16 15 19 19 O 1.20913 * 111.60913 * 359.76687 * 18 17 16 20 20 H 1.09005 * 109.46951 * 174.84716 * 1 2 3 21 21 H 1.08999 * 109.47125 * 54.84992 * 1 2 3 22 22 H 1.08994 * 109.47122 * 294.84434 * 1 2 3 23 23 H 1.09003 * 109.46986 * 119.99938 * 2 1 3 24 24 H 1.09000 * 109.46828 * 239.99879 * 2 1 3 25 25 H 0.97004 * 120.00237 * 180.02562 * 8 7 5 26 26 H 1.00905 * 110.99734 * 321.94494 * 13 3 2 27 27 H 1.08995 * 109.47219 * 294.81652 * 14 13 3 28 28 H 1.08999 * 109.47280 * 54.82329 * 14 13 3 29 29 H 1.07999 * 128.00214 * 0.02562 * 16 15 14 30 30 H 1.07998 * 126.80427 * 180.09758 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6921 -2.6675 9 14 0.9130 2.6814 -3.8910 10 1 0.1266 3.8343 -3.3835 11 1 1.9962 3.1733 -4.7798 12 1 0.0210 1.7720 -4.6543 13 7 1.6547 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2830 2.6253 3.5442 16 6 1.4850 2.2210 4.5612 17 6 1.4802 3.3206 5.4499 18 7 2.2300 4.2354 4.9063 19 8 2.6845 3.8676 3.8479 20 1 -0.3633 -1.0236 -0.0923 21 1 -0.3633 0.5916 -0.8403 22 1 -0.3633 0.4318 0.9325 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 2.5621 0.3877 -3.5748 26 1 0.7319 1.8103 1.5467 27 1 2.6480 0.7729 2.5494 28 1 3.6323 2.1359 1.9649 29 1 0.9726 1.2764 4.6693 30 1 0.9549 3.3897 6.3909 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231896530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:20 Heat of formation + Delta-G solvation = 39.541562 kcal Electronic energy + Delta-G solvation = -13762.595481 eV Core-core repulsion = 11367.475591 eV Total energy + Delta-G solvation = -2395.119891 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.77618 -38.47922 -35.21670 -34.54907 -33.25793 -31.46101 -28.53537 -26.21853 -25.00481 -24.31353 -22.22982 -21.20949 -18.70519 -18.42590 -17.73971 -16.74198 -16.37840 -15.79725 -15.17065 -14.93839 -14.36006 -14.28749 -14.14644 -13.66396 -13.08230 -12.81657 -12.56174 -12.41568 -12.29114 -11.90272 -11.66044 -11.39444 -11.37747 -10.98310 -10.41609 -10.36236 -9.01110 -8.04794 -6.12202 0.53722 1.42533 1.42879 1.46557 1.56791 2.20430 2.47681 3.24794 3.54561 3.60747 3.90537 4.21046 4.29513 4.53076 4.59310 4.65102 4.76264 4.78975 4.86971 5.14285 5.22132 5.36273 5.45181 5.74809 5.78728 5.84150 6.32615 6.63473 6.78572 6.98879 7.32931 7.55303 9.00496 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046255 B = 0.007452 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.194508 B = 3756.539049 C = 4026.990020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 C 0.222 3.778 4 H 0.007 0.993 5 C -0.501 4.501 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.688 5.688 14 C 0.135 3.865 15 C -0.016 4.016 16 C -0.231 4.231 17 C -0.002 4.002 18 N -0.404 5.404 19 O 0.069 5.931 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.259 0.741 26 H 0.338 0.662 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.198 0.802 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -1.477 11.843 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.025 0.975 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.321 5.321 14 C 0.005 3.995 15 C -0.080 4.080 16 C -0.253 4.253 17 C -0.180 4.180 18 N -0.112 5.112 19 O 0.009 5.991 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.158 0.842 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.215 0.785 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.075 0.281 11.853 12.036 hybrid contribution -0.683 -1.225 -0.863 1.647 sum -2.758 -0.944 10.990 11.370 Atomic orbital electron populations 1.21507 0.96065 0.99671 1.00900 1.21974 0.96436 0.99506 1.00030 1.19013 0.94256 0.89615 0.85712 0.97467 1.21305 1.30408 1.11351 0.90939 0.93223 1.25510 0.95945 0.95861 1.00829 1.69990 1.39842 1.24981 1.21041 0.85670 0.78240 0.78843 0.79855 1.19709 1.21102 1.20653 1.60633 1.04651 1.63762 1.03021 1.20354 0.97611 0.95620 0.85943 1.24792 0.98544 0.85702 0.98928 1.22964 1.04371 1.03606 0.94381 1.25649 0.99335 0.89737 1.03299 1.73872 1.15292 1.25026 0.97025 1.84797 1.56169 1.28577 1.29586 0.93831 0.93891 0.93017 0.94530 0.91872 0.93148 0.84235 0.90321 0.90117 0.78472 0.75869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.40 71.98 0.68 -4.11 16 2 C -0.14 -6.01 5.51 30.60 0.17 -5.84 16 3 C 0.22 10.41 2.33 44.17 0.10 10.52 16 4 H 0.01 0.39 7.70 -2.39 -0.02 0.37 16 5 C -0.50 -26.61 7.25 25.60 0.19 -26.42 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.02 0.91 5.28 84.65 0.45 1.36 16 8 N -0.92 -50.93 11.38 21.44 0.24 -50.69 16 9 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.69 -27.05 6.19 -499.45 -3.09 -30.14 16 14 C 0.13 4.33 6.07 85.56 0.52 4.85 16 15 C -0.02 -0.46 7.05 25.04 0.18 -0.29 16 16 C -0.23 -5.43 11.09 22.40 0.25 -5.18 16 17 C 0.00 -0.04 12.17 85.71 1.04 1.00 16 18 N -0.40 -12.66 12.07 -59.26 -0.72 -13.38 16 19 O 0.07 2.37 11.20 71.61 0.80 3.17 16 20 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.04 1.88 6.85 -2.39 -0.02 1.87 16 22 H 0.05 1.72 6.63 -2.39 -0.02 1.70 16 23 H 0.04 1.36 7.50 -2.39 -0.02 1.35 16 24 H 0.06 3.16 6.23 -2.39 -0.01 3.14 16 25 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.34 12.30 6.69 -89.69 -0.60 11.70 16 27 H 0.08 2.19 7.53 -2.39 -0.02 2.17 16 28 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 29 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -60.20 255.31 3.37 -56.82 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.54 Total: 13.02 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.57 Total: -24.12 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -3.57 Total: -94.20 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.80 Total: 3.17 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -60.20 3.37 -56.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231896530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.366 kcal (2) G-P(sol) polarization free energy of solvation -60.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds