Wall clock time and date at job start Sun Mar 29 2020 21:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46895 * 2 1 4 4 H 1.08997 * 109.47439 * 174.08889 * 3 2 1 5 5 C 1.50704 * 109.47300 * 54.08793 * 3 2 1 6 6 H 1.07995 * 119.99977 * 240.00311 * 5 3 2 7 7 C 1.37872 * 119.99754 * 60.00043 * 5 3 2 8 8 N 1.31511 * 120.00376 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47182 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47304 * 119.99762 * 9 7 5 12 12 H 1.48504 * 109.47243 * 239.99786 * 9 7 5 13 13 N 1.46901 * 109.47212 * 294.08610 * 3 2 1 14 14 C 1.46895 * 111.00014 * 275.78870 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.20460 * 14 13 3 16 16 C 1.35442 * 126.77900 * 89.70779 * 15 14 13 17 17 C 1.41385 * 103.98849 * 179.91065 * 16 15 14 18 18 N 1.30175 * 106.38830 * 0.35274 * 17 16 15 19 19 O 1.20919 * 111.61177 * 359.77707 * 18 17 16 20 20 H 1.08999 * 109.47288 * 298.55833 * 1 2 3 21 21 H 1.08998 * 109.46552 * 178.55730 * 1 2 3 22 22 H 1.08998 * 109.46908 * 58.55982 * 1 2 3 23 23 H 1.09000 * 109.47212 * 119.99768 * 2 1 3 24 24 H 1.08996 * 109.47374 * 239.99920 * 2 1 3 25 25 H 0.97004 * 120.00152 * 180.02562 * 8 7 5 26 26 H 1.00903 * 110.99927 * 39.74059 * 13 3 2 27 27 H 1.09005 * 109.47061 * 296.19731 * 14 13 3 28 28 H 1.08997 * 109.47274 * 56.20246 * 14 13 3 29 29 H 1.08006 * 128.00882 * 359.97438 * 16 15 14 30 30 H 1.07995 * 126.80472 * 180.10012 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4445 0.1058 5 6 1.4217 2.1940 1.1508 6 1 0.8148 3.0670 0.9617 7 6 1.6309 1.7668 2.4448 8 7 2.3695 0.7033 2.6750 9 14 0.8639 2.6977 3.8712 10 1 0.0841 3.8485 3.3490 11 1 -0.0370 1.7909 4.6270 12 1 1.9354 3.1942 4.7716 13 7 1.6703 2.0926 -1.2644 14 6 2.6510 1.7938 -2.3164 15 6 2.1912 2.3983 -3.6181 16 6 2.4721 3.6404 -4.0793 17 6 1.8095 3.6996 -5.3269 18 7 1.2185 2.5505 -5.4838 19 8 1.4188 1.8148 -4.5453 20 1 -0.3634 0.4913 0.9026 21 1 -0.3632 -1.0274 -0.0259 22 1 -0.3633 0.5360 -0.8768 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 2.5163 0.4025 3.5855 26 1 0.7404 1.8249 -1.5503 27 1 3.6181 2.2150 -2.0418 28 1 2.7441 0.7138 -2.4302 29 1 3.0657 4.4077 -3.6045 30 1 1.7933 4.5344 -6.0119 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231896533.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:21 Heat of formation + Delta-G solvation = 39.843827 kcal Electronic energy + Delta-G solvation = -13779.689610 eV Core-core repulsion = 11384.582826 eV Total energy + Delta-G solvation = -2395.106784 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.80864 -38.48421 -35.19919 -34.59845 -33.25695 -31.47272 -28.55105 -26.20772 -25.02744 -24.33816 -22.24457 -21.20038 -18.68064 -18.45003 -17.74834 -16.75161 -16.49613 -15.87205 -15.24236 -14.79787 -14.37861 -14.26698 -13.85765 -13.53874 -13.50882 -12.80810 -12.56263 -12.42631 -12.29567 -11.89018 -11.71648 -11.40773 -11.38858 -10.97722 -10.41673 -10.36452 -9.02881 -8.04302 -6.11825 0.50957 1.42379 1.43740 1.47682 1.57775 2.14651 2.48268 3.25698 3.53076 3.65914 3.78731 4.18786 4.36994 4.55224 4.56460 4.64110 4.74849 4.77896 4.90194 5.13229 5.21760 5.34117 5.43140 5.69787 5.76727 5.83017 6.30959 6.61268 6.72315 6.98734 7.28960 7.55637 9.01433 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049815 B = 0.007342 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.946246 B = 3812.848673 C = 4033.936913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.142 4.142 3 C 0.221 3.779 4 H 0.012 0.988 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.139 3.861 15 C -0.026 4.026 16 C -0.219 4.219 17 C -0.002 4.002 18 N -0.400 5.400 19 O 0.069 5.931 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.333 0.667 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.192 0.808 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 3.349 -10.218 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.181 4.181 3 C 0.113 3.887 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.313 5.313 14 C 0.009 3.991 15 C -0.090 4.090 16 C -0.241 4.241 17 C -0.180 4.180 18 N -0.108 5.108 19 O 0.008 5.992 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.152 0.848 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.209 0.791 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.033 3.299 -10.856 11.346 hybrid contribution 0.018 -0.112 1.240 1.245 sum -0.015 3.187 -9.616 10.130 Atomic orbital electron populations 1.21471 0.96282 0.99350 1.00766 1.21993 0.96305 1.00042 0.99807 1.19011 0.94593 0.89369 0.85705 0.96967 1.21279 1.30381 1.11431 0.90800 0.92947 1.25524 0.95970 0.95866 1.00818 1.69998 1.40161 1.25101 1.20669 0.85647 0.78250 0.78824 0.79744 1.19517 1.20966 1.20978 1.60889 1.04667 1.63028 1.02752 1.20422 0.97127 0.98270 0.83282 1.24730 0.95817 0.94652 0.93800 1.22914 1.06716 0.97808 0.96646 1.25648 0.96677 0.97157 0.98534 1.73847 1.22286 1.05553 1.09072 1.84770 1.53160 1.38801 1.22515 0.93878 0.93855 0.93593 0.91686 0.95065 0.93161 0.84838 0.87482 0.93393 0.79086 0.75888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.39 71.98 0.68 -4.28 16 2 C -0.14 -6.33 5.50 30.60 0.17 -6.17 16 3 C 0.22 10.38 2.33 44.17 0.10 10.48 16 4 H 0.01 0.64 7.86 -2.39 -0.02 0.62 16 5 C -0.50 -26.20 7.35 25.60 0.19 -26.02 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.02 0.88 5.22 84.65 0.44 1.33 16 8 N -0.92 -50.77 11.39 21.44 0.24 -50.53 16 9 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -26.85 6.24 -499.45 -3.12 -29.97 16 14 C 0.14 4.48 6.05 85.56 0.52 5.00 16 15 C -0.03 -0.78 6.96 25.04 0.17 -0.61 16 16 C -0.22 -5.48 11.09 22.40 0.25 -5.24 16 17 C 0.00 -0.04 12.17 85.71 1.04 1.00 16 18 N -0.40 -12.03 12.07 -59.25 -0.72 -12.74 16 19 O 0.07 2.19 11.20 71.60 0.80 3.00 16 20 H 0.04 1.95 7.05 -2.39 -0.02 1.93 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.05 1.71 6.42 -2.39 -0.02 1.69 16 23 H 0.06 3.32 6.25 -2.39 -0.01 3.30 16 24 H 0.03 1.25 7.24 -2.39 -0.02 1.23 16 25 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 26 H 0.33 12.93 6.55 -89.69 -0.59 12.34 16 27 H 0.11 3.26 8.13 -2.38 -0.02 3.24 16 28 H 0.05 1.53 7.23 -2.39 -0.02 1.51 16 29 H 0.19 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -58.11 254.93 3.35 -54.75 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.55 Total: 15.20 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.56 Total: -24.50 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -3.59 Total: -93.24 kcal Atomic # 8 Polarization: 2.19 SS G_CDS: 0.80 Total: 3.00 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -58.11 3.35 -54.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231896533.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.599 kcal (2) G-P(sol) polarization free energy of solvation -58.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds