Wall clock time and date at job start Sun Mar 29 2020 21:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47091 * 120.00183 * 2 1 3 5 5 N 1.29948 * 126.28469 * 300.02334 * 4 2 1 6 6 O 1.21303 * 110.24669 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.55048 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47320 * 269.97414 * 8 7 6 10 10 C 1.50692 * 109.47320 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00131 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00265 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99890 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00471 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46978 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47200 * 120.00116 * 14 12 10 17 17 H 1.48504 * 109.47035 * 240.00624 * 14 12 10 18 18 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 19 19 H 1.09000 * 109.47275 * 299.99918 * 1 2 3 20 20 H 1.09004 * 109.47233 * 60.00162 * 1 2 3 21 21 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47275 * 240.00082 * 2 1 3 23 23 H 1.08993 * 109.47313 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47163 * 300.00502 * 3 2 1 25 25 H 1.09000 * 109.46958 * 59.99888 * 3 2 1 26 26 H 1.08995 * 109.47428 * 29.97302 * 8 7 6 27 27 H 1.08999 * 109.47183 * 149.97495 * 8 7 6 28 28 H 1.09000 * 109.47216 * 300.00452 * 9 8 7 29 29 H 1.08999 * 109.46926 * 59.99925 * 9 8 7 30 30 H 0.96993 * 119.99993 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3416 -1.1476 3.2215 7 6 3.0008 -2.0772 2.5235 8 6 3.8083 -3.2180 3.0870 9 6 5.2588 -2.7705 3.2783 10 6 6.0661 -3.9111 3.8425 11 1 5.5922 -4.8603 4.0440 12 6 7.4101 -3.7431 4.1004 13 7 7.9875 -2.5873 3.8546 14 14 8.4110 -5.1571 4.7990 15 1 7.5336 -6.3410 4.9835 16 1 9.5097 -5.4974 3.8597 17 1 8.9854 -4.7573 6.1088 18 7 2.8107 -1.8070 1.2545 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.3910 -3.5185 4.0480 27 1 3.7762 -4.0614 2.3972 28 1 5.6761 -2.4699 2.3173 29 1 5.2909 -1.9271 3.9681 30 1 8.9328 -2.4690 4.0364 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232755451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:56 Heat of formation + Delta-G solvation = 37.501771 kcal Electronic energy + Delta-G solvation = -13411.619329 eV Core-core repulsion = 11016.410987 eV Total energy + Delta-G solvation = -2395.208343 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.07688 -36.62207 -35.01258 -33.60583 -32.08522 -29.98002 -27.29193 -25.83653 -24.25396 -22.99069 -21.39343 -19.57973 -17.58324 -17.10189 -16.38978 -14.92979 -14.62831 -14.49408 -13.86967 -13.45115 -13.29235 -12.45198 -12.34036 -12.06556 -11.70212 -11.59970 -11.46093 -11.08218 -11.00140 -10.93476 -10.66518 -10.52015 -10.12391 -9.98554 -9.31298 -9.13946 -8.45626 -6.09664 -4.14347 1.64935 2.68490 3.27943 3.34919 3.38017 3.41897 3.92601 4.38107 4.43540 4.97620 4.99442 5.07477 5.27096 5.49387 5.52609 5.69558 5.76282 5.80790 5.99460 6.10562 6.17151 6.20358 6.26265 6.49126 6.63713 7.49433 7.56508 7.86193 8.21604 8.64628 8.91282 9.50695 11.01727 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.068780 B = 0.005860 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.995907 B = 4777.051641 C = 4921.018049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.168 3.832 5 N -0.397 5.397 6 O 0.066 5.934 7 C 0.212 3.788 8 C -0.028 4.028 9 C 0.027 3.973 10 C -0.525 4.525 11 H 0.062 0.938 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 N -0.498 5.498 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 3.692 -5.601 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 C -0.203 4.203 4 C -0.105 4.105 5 N -0.108 5.108 6 O 0.010 5.990 7 C -0.007 4.007 8 C -0.067 4.067 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 N -0.231 5.231 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.994 4.403 -5.796 14.030 hybrid contribution 0.815 -0.763 0.480 1.215 sum -11.179 3.640 -5.317 12.903 Atomic orbital electron populations 1.21828 0.93280 1.02356 1.02600 1.19476 0.96033 0.95317 0.91375 1.21836 1.01746 0.94119 1.02553 1.25734 0.96992 0.93282 0.94472 1.74481 1.18843 1.14726 1.02772 1.85269 1.48104 1.30242 1.35360 1.29612 0.92023 0.93444 0.85597 1.20740 0.96037 0.89200 1.00760 1.19162 0.86077 0.97657 0.98201 1.21111 0.93994 0.98020 1.43193 0.91964 1.25017 0.97906 0.95871 0.95472 1.69979 1.11636 1.23426 1.47973 0.86449 0.80108 0.82247 0.78692 1.19547 1.20941 1.20925 1.71933 1.17910 1.14655 1.18627 0.91973 0.91386 0.92422 0.88306 0.92136 0.91385 0.91957 0.89126 0.88261 0.95535 0.95810 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.69 9.18 37.16 0.34 -1.35 16 4 C 0.17 2.95 6.72 -156.37 -1.05 1.90 16 5 N -0.40 -7.37 12.16 30.90 0.38 -7.00 16 6 O 0.07 1.27 11.31 18.10 0.20 1.47 16 7 C 0.21 4.15 7.77 -13.06 -0.10 4.05 16 8 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 9 C 0.03 0.68 4.95 -27.88 -0.14 0.54 16 10 C -0.52 -14.09 9.11 -34.44 -0.31 -14.41 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 14 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 N -0.50 -9.78 11.55 -9.87 -0.11 -9.89 16 19 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 266.31 15.07 4.01 4.01 Total: -1.00 -30.07 266.31 -5.49 -35.56 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -4.19 Total: -4.60 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.49 Total: -9.95 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.00 Total: -42.41 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.07 -5.49 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232755451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.065 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds