Wall clock time and date at job start Sun Mar 29 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46727 * 2 1 4 4 N 1.28425 * 125.35792 * 90.02333 * 3 2 1 5 5 C 1.31483 * 111.47628 * 179.97438 * 4 3 2 6 6 N 1.48005 * 125.80586 * 179.97438 * 5 4 3 7 7 O 1.31704 * 120.00495 * 0.03230 * 6 5 4 8 8 O 1.31708 * 119.99737 * 180.02562 * 6 5 4 9 9 C 1.38523 * 108.38509 * 0.02562 * 5 4 3 10 10 C 1.37987 * 125.35718 * 269.97485 * 3 2 1 11 11 C 1.38780 * 127.17154 * 0.02562 * 10 3 2 12 12 H 1.08001 * 119.99838 * 352.68704 * 11 10 3 13 13 C 1.46672 * 119.99952 * 172.68379 * 11 10 3 14 14 N 1.29469 * 119.99866 * 6.05994 * 13 11 10 15 15 Si 1.86798 * 120.00075 * 186.06422 * 13 11 10 16 16 H 1.48502 * 109.47097 * 94.98615 * 15 13 11 17 17 H 1.48498 * 109.47263 * 214.98530 * 15 13 11 18 18 H 1.48500 * 109.47258 * 334.98497 * 15 13 11 19 19 H 1.08997 * 109.47432 * 300.00209 * 1 2 3 20 20 H 1.09001 * 109.46676 * 60.00684 * 1 2 3 21 21 H 1.09000 * 109.46726 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47432 * 239.99791 * 2 1 3 23 23 H 1.09005 * 109.47121 * 119.99472 * 2 1 3 24 24 H 1.08008 * 127.39793 * 180.02562 * 9 5 4 25 25 H 0.96999 * 120.00019 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2663 2.0818 1.0474 5 6 2.6921 3.2851 0.7319 6 7 3.0682 4.3492 1.6895 7 8 2.9899 4.1269 2.9852 8 8 3.4815 5.5183 1.2457 9 6 2.7277 3.3879 -0.6490 10 6 2.2848 2.1339 -1.1254 11 6 2.1460 1.7410 -2.4491 12 1 1.9090 0.7143 -2.6857 13 6 2.3212 2.7203 -3.5269 14 7 2.7196 3.9211 -3.2521 15 14 1.9694 2.2350 -5.2961 16 1 0.5802 2.6235 -5.6491 17 1 2.9222 2.9296 -6.1988 18 1 2.1260 0.7660 -5.4470 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 3.0303 4.2428 -1.2356 25 1 2.8358 4.5686 -3.9649 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253402017.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:17 Heat of formation + Delta-G solvation = 83.630726 kcal Electronic energy + Delta-G solvation = -13677.592326 eV Core-core repulsion = 11083.125279 eV Total energy + Delta-G solvation = -2594.467047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07514 -37.67296 -34.14840 -33.78291 -33.39883 -30.04129 -29.47589 -25.96090 -25.48944 -22.68359 -20.74360 -19.59954 -18.11608 -17.10396 -16.19521 -15.76097 -15.27214 -14.73894 -14.23082 -13.98492 -12.99484 -12.52179 -12.14705 -11.98307 -11.75580 -11.57955 -10.87924 -10.85060 -10.62584 -10.42560 -10.16918 -9.86746 -9.81617 -9.49781 -8.48433 -7.93568 -7.21504 -4.84528 0.54852 1.97237 2.63959 2.81744 2.86884 3.20093 3.51352 3.73449 3.77483 4.68814 5.11659 5.40415 5.56031 5.79903 5.83820 6.19453 6.28419 6.38344 6.51721 6.68290 7.13331 7.29470 7.58980 7.91154 7.98823 8.20830 8.46674 9.15987 9.70025 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.011719 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.095066 B = 2388.713518 C = 3282.994367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.137 3.863 3 N -0.315 5.315 4 N -0.318 5.318 5 C 0.131 3.869 6 N 0.037 4.963 7 O -0.206 6.206 8 O -0.194 6.194 9 C -0.284 4.284 10 C 0.212 3.788 11 C -0.449 4.449 12 H 0.091 0.909 13 C 0.077 3.923 14 N -0.747 5.747 15 Si 0.936 3.064 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.257 1.257 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.179 0.821 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -6.336 -3.858 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.113 5.113 4 N -0.158 5.158 5 C -0.106 4.106 6 N 0.508 4.492 7 O -0.393 6.393 8 O -0.379 6.379 9 C -0.320 4.320 10 C 0.097 3.903 11 C -0.483 4.483 12 H 0.109 0.891 13 C -0.151 4.151 14 N -0.369 5.369 15 Si 0.759 3.241 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.180 1.180 19 H 0.079 0.921 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.103 0.897 24 H 0.196 0.804 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.320 -7.224 -3.285 8.602 hybrid contribution 0.134 0.678 -1.014 1.227 sum -3.185 -6.546 -4.299 8.454 Atomic orbital electron populations 1.22148 0.94864 1.02204 1.03405 1.21527 0.94971 0.78176 1.03702 1.45728 1.51492 1.11613 1.02470 1.72503 1.24296 1.03521 1.15498 1.20977 1.13925 0.88718 0.86946 1.49384 0.95545 1.01936 1.02287 1.96185 1.60802 1.88701 0.93633 1.96214 1.50884 1.06773 1.84021 1.22097 1.20154 1.01917 0.87794 1.19078 0.95287 0.88097 0.87789 1.19526 1.45015 0.96734 0.87056 0.89113 1.27284 0.91844 0.93675 1.02334 1.68993 1.26478 1.04495 1.36925 0.85839 0.79425 0.80338 0.78541 1.18904 1.19563 1.18007 0.92122 0.91372 0.91166 0.88690 0.89708 0.80382 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 15 2 C 0.14 2.27 6.85 -4.04 -0.03 2.24 15 3 N -0.31 -7.11 3.39 -58.47 -0.20 -7.31 15 4 N -0.32 -8.01 11.88 32.85 0.39 -7.62 15 5 C 0.13 3.49 8.19 -146.41 -1.20 2.29 15 6 N 0.04 0.99 4.98 32.87 0.16 1.15 15 7 O -0.21 -5.37 19.96 -31.57 -0.63 -6.00 15 8 O -0.19 -5.05 19.76 -31.57 -0.62 -5.68 15 9 C -0.28 -7.57 9.71 -38.33 -0.37 -7.94 15 10 C 0.21 5.23 6.75 -83.74 -0.57 4.67 15 11 C -0.45 -10.22 9.26 -35.98 -0.33 -10.56 15 12 H 0.09 1.85 7.22 -52.49 -0.38 1.47 15 13 C 0.08 1.68 5.66 -15.14 -0.09 1.59 15 14 N -0.75 -17.19 10.57 55.99 0.59 -16.60 15 15 Si 0.94 15.87 29.65 -169.99 -5.04 10.83 15 16 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 17 H -0.27 -4.53 7.11 56.52 0.40 -4.13 15 18 H -0.26 -4.23 7.11 56.52 0.40 -3.82 15 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.09 1.39 7.30 -51.93 -0.38 1.01 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 24 H 0.18 4.90 6.02 -52.48 -0.32 4.58 15 25 H 0.30 6.02 8.27 -40.82 -0.34 5.68 15 LS Contribution 239.55 15.07 3.61 3.61 Total: -1.00 -28.46 239.55 -5.84 -34.30 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -1.90 Total: 3.05 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -2.20 Total: -9.75 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.95 Total: -30.37 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.25 Total: -11.68 kcal Atomic # 14 Polarization: 15.87 SS G_CDS: -5.04 Total: 10.83 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.46 -5.84 -34.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253402017.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.928 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds