Wall clock time and date at job start Sun Mar 29 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46727 * 2 1 4 4 N 1.28425 * 125.35792 * 90.02333 * 3 2 1 5 5 C 1.31483 * 111.47628 * 179.97438 * 4 3 2 6 6 N 1.48005 * 125.80586 * 179.97438 * 5 4 3 7 7 O 1.31704 * 120.00495 * 0.03230 * 6 5 4 8 8 O 1.31708 * 119.99737 * 180.02562 * 6 5 4 9 9 C 1.38523 * 108.38509 * 0.02562 * 5 4 3 10 10 C 1.37987 * 125.35718 * 269.97485 * 3 2 1 11 11 C 1.38780 * 127.17154 * 0.02562 * 10 3 2 12 12 H 1.08001 * 119.99838 * 352.68704 * 11 10 3 13 13 C 1.46672 * 119.99952 * 172.68379 * 11 10 3 14 14 N 1.29469 * 119.99866 * 6.05994 * 13 11 10 15 15 Si 1.86798 * 120.00075 * 186.06422 * 13 11 10 16 16 H 1.48502 * 109.47097 * 94.98615 * 15 13 11 17 17 H 1.48498 * 109.47263 * 214.98530 * 15 13 11 18 18 H 1.48500 * 109.47258 * 334.98497 * 15 13 11 19 19 H 1.08997 * 109.47432 * 300.00209 * 1 2 3 20 20 H 1.09001 * 109.46676 * 60.00684 * 1 2 3 21 21 H 1.09000 * 109.46726 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47432 * 239.99791 * 2 1 3 23 23 H 1.09005 * 109.47121 * 119.99472 * 2 1 3 24 24 H 1.08008 * 127.39793 * 180.02562 * 9 5 4 25 25 H 0.96999 * 120.00019 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2663 2.0818 1.0474 5 6 2.6921 3.2851 0.7319 6 7 3.0682 4.3492 1.6895 7 8 2.9899 4.1269 2.9852 8 8 3.4815 5.5183 1.2457 9 6 2.7277 3.3879 -0.6490 10 6 2.2848 2.1339 -1.1254 11 6 2.1460 1.7410 -2.4491 12 1 1.9090 0.7143 -2.6857 13 6 2.3212 2.7203 -3.5269 14 7 2.7196 3.9211 -3.2521 15 14 1.9694 2.2350 -5.2961 16 1 0.5802 2.6235 -5.6491 17 1 2.9222 2.9296 -6.1988 18 1 2.1260 0.7660 -5.4470 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 3.0303 4.2428 -1.2356 25 1 2.8358 4.5686 -3.9649 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253402017.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:17 Heat of formation + Delta-G solvation = 66.977129 kcal Electronic energy + Delta-G solvation = -13678.314480 eV Core-core repulsion = 11083.125279 eV Total energy + Delta-G solvation = -2595.189201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.93178 -39.71886 -35.88538 -35.45438 -35.30785 -31.86741 -31.17931 -27.82474 -27.28709 -24.19359 -22.62415 -21.41246 -19.93417 -19.13438 -18.03280 -17.50552 -17.21297 -16.27911 -16.01782 -15.35816 -14.65080 -14.15542 -13.70484 -13.43990 -13.04908 -13.01782 -12.55875 -12.41075 -12.25798 -12.12513 -11.96129 -11.90419 -11.48182 -11.39987 -10.30845 -9.83366 -8.86898 -6.66779 -1.50021 -0.00145 1.08853 1.43706 1.52521 1.61677 1.93007 2.00049 2.20345 2.96046 3.64622 4.15645 4.16850 4.32001 4.38864 4.63077 4.84476 4.87712 4.93015 5.23342 5.25723 5.50494 5.64244 5.98230 6.13847 6.40096 6.68543 7.25433 8.07258 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.011719 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.095066 B = 2388.713518 C = 3282.994367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 N -0.304 5.304 4 N -0.316 5.316 5 C 0.106 3.894 6 N 0.038 4.962 7 O -0.210 6.210 8 O -0.213 6.213 9 C -0.323 4.323 10 C 0.196 3.804 11 C -0.455 4.455 12 H 0.118 0.882 13 C 0.036 3.964 14 N -0.780 5.780 15 Si 1.015 2.985 16 H -0.260 1.260 17 H -0.268 1.268 18 H -0.241 1.241 19 H 0.043 0.957 20 H 0.055 0.945 21 H 0.115 0.885 22 H 0.119 0.881 23 H 0.104 0.896 24 H 0.161 0.839 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -8.720 -5.663 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.105 5.105 4 N -0.158 5.158 5 C -0.129 4.129 6 N 0.504 4.496 7 O -0.396 6.396 8 O -0.393 6.393 9 C -0.360 4.360 10 C 0.082 3.918 11 C -0.489 4.489 12 H 0.136 0.864 13 C -0.190 4.190 14 N -0.402 5.402 15 Si 0.832 3.168 16 H -0.185 1.185 17 H -0.193 1.193 18 H -0.163 1.163 19 H 0.062 0.938 20 H 0.074 0.926 21 H 0.133 0.867 22 H 0.137 0.863 23 H 0.122 0.878 24 H 0.179 0.821 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.214 -9.573 -5.056 11.617 hybrid contribution 0.379 1.304 -0.508 1.450 sum -3.835 -8.268 -5.564 10.679 Atomic orbital electron populations 1.22112 0.92973 1.04675 1.01946 1.22164 0.96503 0.75278 1.05887 1.46336 1.49980 1.12982 1.01232 1.72449 1.23481 1.03106 1.16769 1.21176 1.15496 0.89265 0.87006 1.49436 0.95730 1.02111 1.02343 1.96150 1.60906 1.88701 0.93831 1.96193 1.51981 1.07097 1.84041 1.22045 1.23095 1.03011 0.87861 1.19363 0.95487 0.87880 0.89038 1.20130 1.43808 0.98349 0.86617 0.86429 1.28469 0.90687 0.93173 1.06648 1.69071 1.26353 1.05842 1.38965 0.84688 0.79127 0.80729 0.72213 1.18504 1.19297 1.16335 0.93760 0.92602 0.86670 0.86266 0.87795 0.82148 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 15 2 C 0.12 3.61 6.85 86.38 0.59 4.20 15 3 N -0.30 -13.42 3.39 -338.90 -1.15 -14.57 15 4 N -0.32 -15.91 11.88 -49.99 -0.59 -16.51 15 5 C 0.11 5.82 8.19 129.83 1.06 6.89 15 6 N 0.04 2.06 4.98 -49.93 -0.25 1.81 15 7 O -0.21 -11.13 19.96 3.51 0.07 -11.06 15 8 O -0.21 -11.59 19.76 3.50 0.07 -11.52 15 9 C -0.32 -17.74 9.71 23.08 0.22 -17.52 15 10 C 0.20 9.62 6.75 39.05 0.26 9.88 15 11 C -0.46 -19.94 9.26 24.60 0.23 -19.71 15 12 H 0.12 4.38 7.22 -2.91 -0.02 4.36 15 13 C 0.04 1.51 5.66 87.24 0.49 2.00 15 14 N -0.78 -35.95 10.57 23.24 0.25 -35.71 15 15 Si 1.01 30.19 29.65 68.60 2.03 32.22 15 16 H -0.26 -7.60 7.11 99.48 0.71 -6.89 15 17 H -0.27 -7.84 7.11 99.48 0.71 -7.14 15 18 H -0.24 -6.54 7.11 99.48 0.71 -5.83 15 19 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.11 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.12 3.02 7.30 -2.39 -0.02 3.00 15 23 H 0.10 2.75 8.14 -2.38 -0.02 2.73 15 24 H 0.16 9.25 6.02 -2.91 -0.02 9.23 15 25 H 0.30 12.41 8.27 -92.71 -0.77 11.64 15 Total: -1.00 -62.35 239.55 5.25 -57.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.22 Total: 15.83 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.60 Total: -17.60 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.75 Total: -64.98 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.14 Total: -22.58 kcal Atomic # 14 Polarization: 30.19 SS G_CDS: 2.03 Total: 32.22 kcal Total: -62.35 5.25 -57.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253402017.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.081 kcal (2) G-P(sol) polarization free energy of solvation -62.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds