Wall clock time and date at job start Sun Mar 29 2020 21:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30179 * 126.80211 * 2 1 4 4 O 1.20919 * 111.60613 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56556 * 359.75574 * 4 3 2 6 6 C 1.50703 * 126.77353 * 180.28724 * 5 4 3 7 7 C 1.35447 * 106.44718 * 0.38221 * 5 4 3 8 8 C 1.50698 * 128.00976 * 179.90764 * 7 5 4 9 9 N 1.46503 * 109.47520 * 269.68352 * 8 7 5 10 10 C 1.46490 * 119.99947 * 269.72400 * 9 8 7 11 11 C 1.36934 * 120.00019 * 89.99453 * 9 8 7 12 12 H 1.08002 * 120.00483 * 340.83745 * 11 9 8 13 13 C 1.38810 * 120.00405 * 160.83523 * 11 9 8 14 14 N 1.31625 * 119.99619 * 345.34042 * 13 11 9 15 15 Si 1.86799 * 120.00489 * 165.33381 * 13 11 9 16 16 H 1.48507 * 109.46877 * 90.00354 * 15 13 11 17 17 H 1.48497 * 109.47058 * 210.00204 * 15 13 11 18 18 H 1.48492 * 109.47003 * 330.00289 * 15 13 11 19 19 H 1.08994 * 109.47683 * 269.98281 * 1 2 3 20 20 H 1.09005 * 109.47382 * 29.98451 * 1 2 3 21 21 H 1.09003 * 109.46930 * 149.97878 * 1 2 3 22 22 H 1.08995 * 109.47367 * 270.11245 * 6 5 4 23 23 H 1.09003 * 109.47240 * 30.11572 * 6 5 4 24 24 H 1.09004 * 109.46522 * 150.11378 * 6 5 4 25 25 H 1.08999 * 109.47552 * 149.67846 * 8 7 5 26 26 H 1.09003 * 109.46651 * 29.68192 * 8 7 5 27 27 H 1.09002 * 109.47222 * 265.17089 * 10 9 8 28 28 H 1.09000 * 109.47430 * 25.17049 * 10 9 8 29 29 H 1.08997 * 109.47658 * 145.16990 * 10 9 8 30 30 H 0.97000 * 120.00023 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0044 6 6 4.9022 -1.3694 0.0115 7 6 2.3539 -1.1320 -0.0004 8 6 1.9590 -2.5863 0.0002 9 7 1.8299 -3.0579 -1.3809 10 6 0.5396 -2.9668 -2.0683 11 6 2.9141 -3.5890 -2.0272 12 1 3.9111 -3.3886 -1.6637 13 6 2.7317 -4.3850 -3.1496 14 7 1.5390 -4.8677 -3.4274 15 14 4.1787 -4.7713 -4.2660 16 1 4.8459 -6.0134 -3.7997 17 1 3.6939 -4.9619 -5.6566 18 1 5.1465 -3.6457 -4.2291 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3634 0.8901 -0.5136 21 1 -0.3633 -0.8898 -0.5142 22 1 5.2202 -1.5549 -1.0144 23 1 5.6637 -0.7849 0.5279 24 1 4.7627 -2.3201 0.5262 25 1 1.0054 -2.7037 0.5148 26 1 2.7232 -3.1700 0.5135 27 1 0.0067 -3.9124 -1.9678 28 1 -0.0530 -2.1669 -1.6244 29 1 0.7047 -2.7533 -3.1244 30 1 1.4115 -5.4236 -4.2119 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259371028.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:30 Heat of formation + Delta-G solvation = 77.275464 kcal Electronic energy + Delta-G solvation = -14236.264614 eV Core-core repulsion = 11842.780988 eV Total energy + Delta-G solvation = -2393.483626 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.27489 -36.18409 -33.98270 -32.93162 -30.97972 -28.39907 -27.71364 -26.09419 -25.59223 -22.15163 -20.39736 -19.40475 -17.10204 -16.78555 -16.22178 -14.89622 -13.97505 -13.76152 -13.51350 -13.15643 -12.98063 -12.69891 -12.58212 -12.35638 -11.85009 -11.54520 -11.05230 -10.86664 -10.83774 -10.54624 -10.22111 -9.99820 -9.86989 -9.25855 -8.62441 -8.43225 -6.84511 -5.74533 -3.17830 2.06750 2.83434 3.36018 3.43441 3.44578 3.71481 4.49733 4.73833 5.03293 5.39629 5.48559 5.65421 5.69461 5.74800 5.80679 5.86324 5.95102 6.14186 6.24562 6.41014 6.52910 6.61903 6.74959 6.87449 7.39516 7.68506 7.79227 8.34620 8.84787 9.20463 9.84148 10.31606 11.30640 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034852 B = 0.011107 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.197639 B = 2520.379449 C = 3039.972779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 N -0.384 5.384 4 O 0.081 5.919 5 C -0.038 4.038 6 C -0.064 4.064 7 C -0.193 4.193 8 C 0.219 3.781 9 N -0.593 5.593 10 C 0.161 3.839 11 C -0.254 4.254 12 H 0.071 0.929 13 C 0.001 3.999 14 N -0.907 5.907 15 Si 0.901 3.099 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 H 0.072 0.928 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.000 1.000 29 H 0.044 0.956 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 5.666 6.850 9.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 N -0.092 5.092 4 O 0.017 5.983 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.200 4.200 8 C 0.091 3.909 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.383 4.383 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.553 5.553 15 Si 0.731 3.269 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.206 1.206 19 H 0.091 0.909 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.204 6.847 6.675 9.638 hybrid contribution 0.650 -0.951 -0.865 1.441 sum 1.854 5.896 5.810 8.483 Atomic orbital electron populations 1.20225 0.86754 1.03814 1.02561 1.23397 0.98557 0.89010 1.02809 1.73706 0.89558 1.24365 1.21613 1.84679 1.21547 1.23268 1.68790 1.24153 0.98557 0.83092 1.04392 1.20249 0.89677 0.98144 1.04100 1.22489 0.91138 1.00408 1.05935 1.19021 0.98918 0.85133 0.87842 1.43920 1.08864 1.70034 1.08648 1.20906 0.85313 0.96112 0.95960 1.19208 0.86550 1.23860 1.08684 0.91130 1.24927 0.96618 0.97929 1.00261 1.70097 1.21132 1.36047 1.28001 0.86308 0.81968 0.78145 0.80444 1.21399 1.21618 1.20575 0.90904 0.91308 0.89409 0.89444 0.91122 0.89198 0.93129 0.92112 0.95115 0.98164 0.93768 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.39 36.00 0.37 -0.79 16 2 C 0.02 0.39 7.33 -82.10 -0.60 -0.21 16 3 N -0.38 -7.52 12.07 33.42 0.40 -7.12 16 4 O 0.08 1.53 11.20 17.18 0.19 1.72 16 5 C -0.04 -0.69 7.49 -35.30 -0.26 -0.96 16 6 C -0.06 -0.94 9.90 36.01 0.36 -0.58 16 7 C -0.19 -3.73 5.90 -104.42 -0.62 -4.35 16 8 C 0.22 4.44 5.97 -5.19 -0.03 4.41 16 9 N -0.59 -14.56 2.91 -182.51 -0.53 -15.09 16 10 C 0.16 3.93 8.97 59.84 0.54 4.47 16 11 C -0.25 -6.73 9.69 -15.06 -0.15 -6.88 16 12 H 0.07 1.78 7.28 -52.49 -0.38 1.39 16 13 C 0.00 0.01 5.08 -17.43 -0.09 -0.07 16 14 N -0.91 -26.11 10.56 55.49 0.59 -25.52 16 15 Si 0.90 21.50 29.58 -169.99 -5.03 16.48 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.09 1.38 5.58 -51.93 -0.29 1.09 16 22 H 0.09 1.35 7.96 -51.93 -0.41 0.93 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.09 1.24 7.44 -51.93 -0.39 0.86 16 25 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 26 H 0.06 1.18 7.34 -51.93 -0.38 0.80 16 27 H 0.03 0.80 7.44 -51.93 -0.39 0.41 16 28 H 0.00 0.00 5.47 -51.93 -0.28 -0.28 16 29 H 0.04 1.18 7.10 -51.93 -0.37 0.81 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -30.35 254.78 -4.73 -35.08 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -3.71 Total: -4.43 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.48 Total: -4.96 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.46 Total: -47.72 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.35 -4.73 -35.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259371028.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.356 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds