Wall clock time and date at job start Sun Mar 29 2020 21:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30179 * 126.80211 * 2 1 4 4 O 1.20919 * 111.60613 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56556 * 359.75574 * 4 3 2 6 6 C 1.50703 * 126.77353 * 180.28724 * 5 4 3 7 7 C 1.35447 * 106.44718 * 0.38221 * 5 4 3 8 8 C 1.50698 * 128.00976 * 179.90764 * 7 5 4 9 9 N 1.46503 * 109.47520 * 269.68352 * 8 7 5 10 10 C 1.46490 * 119.99947 * 269.72400 * 9 8 7 11 11 C 1.36934 * 120.00019 * 89.99453 * 9 8 7 12 12 H 1.08002 * 120.00483 * 340.83745 * 11 9 8 13 13 C 1.38810 * 120.00405 * 160.83523 * 11 9 8 14 14 N 1.31625 * 119.99619 * 345.34042 * 13 11 9 15 15 Si 1.86799 * 120.00489 * 165.33381 * 13 11 9 16 16 H 1.48507 * 109.46877 * 90.00354 * 15 13 11 17 17 H 1.48497 * 109.47058 * 210.00204 * 15 13 11 18 18 H 1.48492 * 109.47003 * 330.00289 * 15 13 11 19 19 H 1.08994 * 109.47683 * 269.98281 * 1 2 3 20 20 H 1.09005 * 109.47382 * 29.98451 * 1 2 3 21 21 H 1.09003 * 109.46930 * 149.97878 * 1 2 3 22 22 H 1.08995 * 109.47367 * 270.11245 * 6 5 4 23 23 H 1.09003 * 109.47240 * 30.11572 * 6 5 4 24 24 H 1.09004 * 109.46522 * 150.11378 * 6 5 4 25 25 H 1.08999 * 109.47552 * 149.67846 * 8 7 5 26 26 H 1.09003 * 109.46651 * 29.68192 * 8 7 5 27 27 H 1.09002 * 109.47222 * 265.17089 * 10 9 8 28 28 H 1.09000 * 109.47430 * 25.17049 * 10 9 8 29 29 H 1.08997 * 109.47658 * 145.16990 * 10 9 8 30 30 H 0.97000 * 120.00023 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0044 6 6 4.9022 -1.3694 0.0115 7 6 2.3539 -1.1320 -0.0004 8 6 1.9590 -2.5863 0.0002 9 7 1.8299 -3.0579 -1.3809 10 6 0.5396 -2.9668 -2.0683 11 6 2.9141 -3.5890 -2.0272 12 1 3.9111 -3.3886 -1.6637 13 6 2.7317 -4.3850 -3.1496 14 7 1.5390 -4.8677 -3.4274 15 14 4.1787 -4.7713 -4.2660 16 1 4.8459 -6.0134 -3.7997 17 1 3.6939 -4.9619 -5.6566 18 1 5.1465 -3.6457 -4.2291 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3634 0.8901 -0.5136 21 1 -0.3633 -0.8898 -0.5142 22 1 5.2202 -1.5549 -1.0144 23 1 5.6637 -0.7849 0.5279 24 1 4.7627 -2.3201 0.5262 25 1 1.0054 -2.7037 0.5148 26 1 2.7232 -3.1700 0.5135 27 1 0.0067 -3.9124 -1.9678 28 1 -0.0530 -2.1669 -1.6244 29 1 0.7047 -2.7533 -3.1244 30 1 1.4115 -5.4236 -4.2119 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259371028.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:30 Heat of formation + Delta-G solvation = 59.103985 kcal Electronic energy + Delta-G solvation = -14237.052588 eV Core-core repulsion = 11842.780988 eV Total energy + Delta-G solvation = -2394.271601 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.72060 -37.92963 -35.56880 -34.36631 -32.86730 -29.75517 -29.15587 -27.91073 -27.30145 -23.92573 -22.00660 -20.82762 -18.73481 -18.52966 -17.74272 -16.82025 -15.55625 -15.34950 -15.22743 -14.79173 -14.26037 -14.19669 -13.83328 -13.68329 -13.31733 -13.14773 -12.77640 -12.72582 -12.58171 -12.31569 -11.98223 -11.83090 -11.64390 -10.70403 -10.60073 -9.94505 -8.83152 -7.79022 -5.23884 0.63834 1.36747 1.48444 1.50602 1.58147 2.34089 2.55124 3.33438 3.39999 3.69876 3.86925 4.09157 4.33411 4.42129 4.65143 4.70292 4.71997 4.76881 4.88890 4.96384 5.04968 5.13561 5.22869 5.37356 5.46125 5.67269 5.75376 6.33568 7.17500 7.41556 7.89181 8.32549 9.24923 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034852 B = 0.011107 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.197639 B = 2520.379449 C = 3039.972779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 N -0.403 5.403 4 O 0.075 5.925 5 C -0.031 4.031 6 C -0.065 4.065 7 C -0.218 4.218 8 C 0.223 3.777 9 N -0.608 5.608 10 C 0.176 3.824 11 C -0.253 4.253 12 H 0.084 0.916 13 C -0.058 4.058 14 N -0.941 5.941 15 Si 0.961 3.039 16 H -0.282 1.282 17 H -0.301 1.301 18 H -0.270 1.270 19 H 0.098 0.902 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.007 0.993 28 H 0.033 0.967 29 H 0.011 0.989 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 6.289 7.811 10.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 N -0.113 5.113 4 O 0.014 5.986 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.225 4.225 8 C 0.096 3.904 9 N -0.331 5.331 10 C 0.031 3.969 11 C -0.383 4.383 12 H 0.101 0.899 13 C -0.252 4.252 14 N -0.589 5.589 15 Si 0.790 3.210 16 H -0.209 1.209 17 H -0.228 1.228 18 H -0.195 1.195 19 H 0.117 0.883 20 H 0.096 0.904 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.026 0.974 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.179 7.494 7.675 10.946 hybrid contribution 0.360 -1.086 -1.072 1.568 sum 2.539 6.408 6.604 9.546 Atomic orbital electron populations 1.20321 0.84660 1.03902 1.04301 1.23919 1.00074 0.88610 1.01656 1.73701 0.89860 1.24881 1.22870 1.84662 1.21468 1.23609 1.68906 1.24764 0.99621 0.82918 1.02167 1.20413 0.88922 0.98622 1.04233 1.22367 0.92044 0.99922 1.08143 1.19090 1.00086 0.85521 0.85697 1.44153 1.08306 1.70201 1.10415 1.20639 0.85809 0.96010 0.94461 1.19640 0.87719 1.22523 1.08419 0.89879 1.25675 0.98803 0.98754 1.01973 1.70262 1.22979 1.37344 1.28276 0.85356 0.79407 0.78243 0.77999 1.20867 1.22767 1.19453 0.88316 0.90377 0.89969 0.90052 0.87827 0.88368 0.91635 0.91269 0.97438 0.94892 0.97042 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.11 10.39 71.23 0.74 -1.37 16 2 C 0.02 0.58 7.33 43.58 0.32 0.89 16 3 N -0.40 -15.08 12.07 -49.55 -0.60 -15.68 16 4 O 0.07 2.69 11.20 71.63 0.80 3.49 16 5 C -0.03 -1.05 7.49 25.04 0.19 -0.86 16 6 C -0.06 -1.70 9.90 71.24 0.71 -0.99 16 7 C -0.22 -8.02 5.90 -19.74 -0.12 -8.13 16 8 C 0.22 8.59 5.97 85.63 0.51 9.10 16 9 N -0.61 -29.31 2.91 -731.33 -2.13 -31.44 16 10 C 0.18 8.55 8.97 127.77 1.15 9.70 16 11 C -0.25 -13.18 9.69 84.03 0.81 -12.37 16 12 H 0.08 4.02 7.28 -2.91 -0.02 4.00 16 13 C -0.06 -3.16 5.08 84.86 0.43 -2.73 16 14 N -0.94 -54.99 10.56 21.65 0.23 -54.77 16 15 Si 0.96 44.09 29.58 68.60 2.03 46.12 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 20 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 21 H 0.08 2.40 5.58 -2.39 -0.01 2.39 16 22 H 0.08 2.29 7.96 -2.39 -0.02 2.27 16 23 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.10 2.42 7.44 -2.39 -0.02 2.41 16 25 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 26 H 0.07 2.53 7.34 -2.39 -0.02 2.51 16 27 H 0.01 0.39 7.44 -2.39 -0.02 0.37 16 28 H 0.03 1.35 5.47 -2.39 -0.01 1.34 16 29 H 0.01 0.59 7.10 -2.39 -0.02 0.58 16 30 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -63.94 254.78 6.21 -57.74 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.14 Total: 1.29 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.74 Total: -6.75 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -2.50 Total: -101.89 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.80 Total: 3.49 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.94 6.21 -57.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259371028.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.840 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds