Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33385 * 125.20101 * 2 1 4 4 C 1.38426 * 114.91968 * 180.02562 * 3 2 1 5 5 C 1.33381 * 114.92358 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20696 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47241 * 90.00292 * 6 5 4 8 8 C 1.46504 * 119.99997 * 270.00496 * 7 6 5 9 9 C 1.36936 * 120.00283 * 89.99839 * 7 6 5 10 10 H 1.07998 * 119.99963 * 342.20106 * 9 7 6 11 11 C 1.38813 * 120.00208 * 162.47364 * 9 7 6 12 12 N 1.31617 * 119.99793 * 345.02631 * 11 9 7 13 13 Si 1.86799 * 119.99875 * 165.02923 * 11 9 7 14 14 H 1.48504 * 109.47405 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47380 * 119.99939 * 13 11 9 16 16 H 1.48504 * 109.46928 * 239.99611 * 13 11 9 17 17 S 1.75878 * 125.20468 * 180.32723 * 2 1 3 18 18 H 1.08999 * 109.46956 * 89.99921 * 1 2 3 19 19 H 1.08998 * 109.47169 * 209.99391 * 1 2 3 20 20 H 1.09000 * 109.47417 * 330.00045 * 1 2 3 21 21 H 1.08004 * 122.54417 * 0.02562 * 3 2 1 22 22 H 1.08011 * 122.53901 * 180.02562 * 4 3 2 23 23 H 1.09007 * 109.47070 * 330.00446 * 6 5 4 24 24 H 1.09001 * 109.47603 * 210.00566 * 6 5 4 25 25 H 1.09001 * 109.47259 * 264.95030 * 8 7 6 26 26 H 1.08997 * 109.47347 * 24.94927 * 8 7 6 27 27 H 1.09004 * 109.47138 * 144.94801 * 8 7 6 28 28 H 0.97000 * 119.99417 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3860 -0.9770 -0.0016 7 7 5.8444 -1.1482 1.3793 8 6 6.5192 -0.0458 2.0691 9 6 5.6421 -2.3385 2.0253 10 1 4.9123 -3.0399 1.6489 11 6 6.3710 -2.6411 3.1673 12 7 7.4465 -1.9434 3.4656 13 14 5.8255 -4.0384 4.2805 14 1 4.5957 -4.6606 3.7276 15 1 6.9031 -5.0571 4.3605 16 1 5.5439 -3.5081 5.6387 17 16 2.5209 -1.4371 -0.0082 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5137 20 1 -0.3634 0.8900 0.5138 21 1 1.8668 2.0895 0.0004 22 1 4.3721 1.6351 -0.0002 23 1 6.0384 -0.2714 -0.5161 24 1 5.4132 -1.9380 -0.5152 25 1 7.5986 -0.1629 1.9721 26 1 6.2152 0.9016 1.6242 27 1 6.2460 -0.0560 3.1243 28 1 7.9560 -2.1552 4.2634 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259648888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = 50.237226 kcal Electronic energy + Delta-G solvation = -11765.735264 eV Core-core repulsion = 9716.113381 eV Total energy + Delta-G solvation = -2049.621883 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.58035 -35.47349 -32.22568 -30.68876 -27.75172 -25.89314 -24.25926 -22.34467 -20.92457 -18.32314 -16.57546 -16.25456 -14.93423 -14.72433 -13.74622 -13.47423 -13.25154 -13.07325 -12.59491 -12.15765 -11.64455 -11.61960 -11.22927 -10.93259 -10.84054 -10.62094 -10.36104 -10.06441 -9.94263 -9.87798 -8.56454 -7.90958 -7.85939 -6.84909 -5.73441 -3.15224 1.58425 2.20878 2.65158 3.29520 3.39146 3.46427 3.49251 4.52335 5.20883 5.39274 5.47052 5.61346 5.64967 5.71105 5.90271 6.02011 6.21817 6.22646 6.50968 6.71474 6.77636 6.90276 7.13164 7.42959 7.70422 7.82602 8.35029 9.21754 9.84511 10.30764 11.31799 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.038740 B = 0.009649 C = 0.008410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.592688 B = 2901.233830 C = 3328.439324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.212 4.212 3 C -0.132 4.132 4 C -0.162 4.162 5 C -0.147 4.147 6 C 0.208 3.792 7 N -0.591 5.591 8 C 0.164 3.836 9 C -0.253 4.253 10 H 0.071 0.929 11 C 0.002 3.998 12 N -0.907 5.907 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.289 1.289 17 S 0.090 5.910 18 H 0.066 0.934 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.126 0.874 22 H 0.130 0.870 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.030 0.970 26 H -0.003 1.003 27 H 0.047 0.953 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 4.276 -6.906 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.330 4.330 3 C -0.163 4.163 4 C -0.192 4.192 5 C -0.268 4.268 6 C 0.078 3.922 7 N -0.312 5.312 8 C 0.019 3.981 9 C -0.382 4.382 10 H 0.088 0.912 11 C -0.196 4.196 12 N -0.553 5.553 13 Si 0.732 3.268 14 H -0.202 1.202 15 H -0.217 1.217 16 H -0.216 1.216 17 S 0.353 5.647 18 H 0.084 0.916 19 H 0.082 0.918 20 H 0.087 0.913 21 H 0.144 0.856 22 H 0.147 0.853 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.016 0.984 27 H 0.066 0.934 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.676 2.696 -6.742 12.098 hybrid contribution 0.004 0.893 0.885 1.257 sum -9.673 3.589 -5.857 11.864 Atomic orbital electron populations 1.20206 0.88778 1.02439 1.01828 1.24338 0.99343 0.96583 1.12700 1.19950 0.93244 0.98407 1.04696 1.19928 0.95602 0.96112 1.07598 1.26245 1.00531 0.96198 1.03839 1.19349 0.86129 0.98645 0.88040 1.43986 1.66441 1.11977 1.08768 1.20842 0.95867 0.85306 0.96077 1.19256 1.16387 0.95093 1.07498 0.91154 1.24891 0.96034 0.98776 0.99915 1.70123 1.16016 1.42278 1.26847 0.86206 0.78084 0.81587 0.80877 1.20202 1.21693 1.21563 1.84198 0.97455 1.09921 1.73156 0.91573 0.91829 0.91335 0.85575 0.85262 0.92174 0.92328 0.95120 0.98398 0.93430 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.38 36.00 0.37 -0.51 15 2 C -0.21 -3.37 6.51 -36.00 -0.23 -3.61 15 3 C -0.13 -2.12 10.05 -41.21 -0.41 -2.54 15 4 C -0.16 -2.90 10.05 -41.21 -0.41 -3.32 15 5 C -0.15 -2.87 6.09 -36.01 -0.22 -3.09 15 6 C 0.21 4.42 6.13 -5.20 -0.03 4.39 15 7 N -0.59 -15.13 2.91 -182.50 -0.53 -15.66 15 8 C 0.16 4.12 8.97 59.85 0.54 4.66 15 9 C -0.25 -7.05 9.70 -15.06 -0.15 -7.19 15 10 H 0.07 1.94 7.87 -52.49 -0.41 1.52 15 11 C 0.00 0.05 5.08 -17.43 -0.09 -0.04 15 12 N -0.91 -26.68 10.50 55.49 0.58 -26.10 15 13 Si 0.90 22.23 29.58 -169.99 -5.03 17.20 15 14 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 17 S 0.09 1.62 23.31 -107.50 -2.51 -0.89 15 18 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.13 1.70 8.06 -52.48 -0.42 1.28 15 22 H 0.13 2.15 8.06 -52.48 -0.42 1.73 15 23 H 0.06 1.16 8.07 -51.92 -0.42 0.75 15 24 H 0.06 1.23 8.04 -51.93 -0.42 0.81 15 25 H 0.03 0.82 7.48 -51.93 -0.39 0.43 15 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 15 27 H 0.05 1.30 7.01 -51.93 -0.36 0.94 15 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 255.96 15.07 3.86 3.86 Total: -1.00 -30.00 255.96 -7.93 -37.93 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -3.67 Total: -5.08 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.64 Total: -11.27 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.05 Total: -41.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.89 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.00 -7.93 -37.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.165 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds