Wall clock time and date at job start Sun Mar 29 2020 21:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33385 * 125.20101 * 2 1 4 4 C 1.38426 * 114.91968 * 180.02562 * 3 2 1 5 5 C 1.33381 * 114.92358 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20696 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47241 * 90.00292 * 6 5 4 8 8 C 1.46504 * 119.99997 * 270.00496 * 7 6 5 9 9 C 1.36936 * 120.00283 * 89.99839 * 7 6 5 10 10 H 1.07998 * 119.99963 * 342.20106 * 9 7 6 11 11 C 1.38813 * 120.00208 * 162.47364 * 9 7 6 12 12 N 1.31617 * 119.99793 * 345.02631 * 11 9 7 13 13 Si 1.86799 * 119.99875 * 165.02923 * 11 9 7 14 14 H 1.48504 * 109.47405 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47380 * 119.99939 * 13 11 9 16 16 H 1.48504 * 109.46928 * 239.99611 * 13 11 9 17 17 S 1.75878 * 125.20468 * 180.32723 * 2 1 3 18 18 H 1.08999 * 109.46956 * 89.99921 * 1 2 3 19 19 H 1.08998 * 109.47169 * 209.99391 * 1 2 3 20 20 H 1.09000 * 109.47417 * 330.00045 * 1 2 3 21 21 H 1.08004 * 122.54417 * 0.02562 * 3 2 1 22 22 H 1.08011 * 122.53901 * 180.02562 * 4 3 2 23 23 H 1.09007 * 109.47070 * 330.00446 * 6 5 4 24 24 H 1.09001 * 109.47603 * 210.00566 * 6 5 4 25 25 H 1.09001 * 109.47259 * 264.95030 * 8 7 6 26 26 H 1.08997 * 109.47347 * 24.94927 * 8 7 6 27 27 H 1.09004 * 109.47138 * 144.94801 * 8 7 6 28 28 H 0.97000 * 119.99417 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3860 -0.9770 -0.0016 7 7 5.8444 -1.1482 1.3793 8 6 6.5192 -0.0458 2.0691 9 6 5.6421 -2.3385 2.0253 10 1 4.9123 -3.0399 1.6489 11 6 6.3710 -2.6411 3.1673 12 7 7.4465 -1.9434 3.4656 13 14 5.8255 -4.0384 4.2805 14 1 4.5957 -4.6606 3.7276 15 1 6.9031 -5.0571 4.3605 16 1 5.5439 -3.5081 5.6387 17 16 2.5209 -1.4371 -0.0082 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5137 20 1 -0.3634 0.8900 0.5138 21 1 1.8668 2.0895 0.0004 22 1 4.3721 1.6351 -0.0002 23 1 6.0384 -0.2714 -0.5161 24 1 5.4132 -1.9380 -0.5152 25 1 7.5986 -0.1629 1.9721 26 1 6.2152 0.9016 1.6242 27 1 6.2460 -0.0560 3.1243 28 1 7.9560 -2.1552 4.2634 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259648888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:18 Heat of formation + Delta-G solvation = 33.570840 kcal Electronic energy + Delta-G solvation = -11766.457973 eV Core-core repulsion = 9716.113381 eV Total energy + Delta-G solvation = -2050.344592 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.98628 -37.30475 -33.91202 -32.31283 -29.30065 -27.94690 -25.78925 -23.76263 -22.74241 -19.74808 -18.56398 -17.64789 -16.94534 -16.09097 -15.52458 -15.21956 -14.64063 -14.51958 -13.88968 -13.69374 -13.28917 -13.05504 -12.90520 -12.68345 -12.48094 -12.46923 -12.08686 -11.94289 -11.82701 -11.46550 -10.67537 -9.29202 -9.25371 -8.87980 -7.85382 -5.29634 0.22918 0.86163 1.28333 1.43557 1.45366 1.55777 1.95982 2.50641 3.28426 3.78525 4.08267 4.20317 4.45302 4.52210 4.76627 4.78366 4.79339 4.86763 4.91703 5.15158 5.33559 5.39361 5.53555 5.59121 5.70073 5.79713 6.27094 7.11634 7.82070 8.24194 9.18424 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.038740 B = 0.009649 C = 0.008410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.592688 B = 2901.233830 C = 3328.439324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.194 4.194 3 C -0.145 4.145 4 C -0.151 4.151 5 C -0.182 4.182 6 C 0.210 3.790 7 N -0.609 5.609 8 C 0.180 3.820 9 C -0.256 4.256 10 H 0.068 0.932 11 C -0.053 4.053 12 N -0.938 5.938 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.289 1.289 16 H -0.291 1.291 17 S 0.058 5.942 18 H 0.087 0.913 19 H 0.067 0.933 20 H 0.089 0.911 21 H 0.159 0.841 22 H 0.141 0.859 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.007 0.993 26 H 0.029 0.971 27 H 0.017 0.983 28 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 5.042 -7.436 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.312 4.312 3 C -0.175 4.175 4 C -0.182 4.182 5 C -0.302 4.302 6 C 0.082 3.918 7 N -0.331 5.331 8 C 0.036 3.964 9 C -0.386 4.386 10 H 0.086 0.914 11 C -0.247 4.247 12 N -0.585 5.585 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.217 1.217 17 S 0.321 5.679 18 H 0.105 0.895 19 H 0.086 0.914 20 H 0.108 0.892 21 H 0.176 0.824 22 H 0.158 0.842 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.756 3.465 -7.312 14.272 hybrid contribution 0.538 0.727 0.929 1.296 sum -11.219 4.191 -6.383 13.571 Atomic orbital electron populations 1.20380 0.85792 1.03680 1.03571 1.24862 1.01109 0.94928 1.10262 1.20253 0.92382 1.00034 1.04844 1.20240 0.97022 0.95632 1.05296 1.25770 0.99957 0.97051 1.07436 1.19372 0.87555 0.98959 0.85887 1.44176 1.67133 1.11424 1.10360 1.20545 0.94491 0.86739 0.94673 1.19486 1.15654 0.95834 1.07643 0.91425 1.25627 0.96324 1.01392 1.01387 1.70267 1.17095 1.43991 1.27168 0.85259 0.77828 0.78971 0.78802 1.19291 1.21575 1.21746 1.84240 0.98031 1.11721 1.73876 0.89478 0.91444 0.89191 0.82368 0.84156 0.90655 0.92914 0.97432 0.95298 0.96389 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.38 71.24 0.74 -0.77 15 2 C -0.19 -5.57 6.51 24.59 0.16 -5.41 15 3 C -0.15 -4.18 10.05 21.22 0.21 -3.96 15 4 C -0.15 -5.05 10.05 21.21 0.21 -4.84 15 5 C -0.18 -6.92 6.09 24.59 0.15 -6.77 15 6 C 0.21 8.86 6.13 85.63 0.53 9.39 15 7 N -0.61 -31.33 2.91 -731.30 -2.13 -33.46 15 8 C 0.18 9.16 8.97 127.77 1.15 10.31 15 9 C -0.26 -14.40 9.70 84.03 0.82 -13.58 15 10 H 0.07 3.75 7.87 -2.91 -0.02 3.73 15 11 C -0.05 -3.01 5.08 84.86 0.43 -2.58 15 12 N -0.94 -56.30 10.50 21.65 0.23 -56.08 15 13 Si 0.96 46.14 29.58 68.60 2.03 48.17 15 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 15 H -0.29 -13.68 7.11 99.48 0.71 -12.97 15 16 H -0.29 -13.89 7.11 99.48 0.71 -13.19 15 17 S 0.06 2.04 23.31 -56.49 -1.32 0.73 15 18 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.16 3.53 8.06 -2.91 -0.02 3.50 15 22 H 0.14 4.29 8.06 -2.91 -0.02 4.27 15 23 H 0.08 2.86 8.07 -2.38 -0.02 2.84 15 24 H 0.05 2.23 8.04 -2.39 -0.02 2.21 15 25 H 0.01 0.40 7.48 -2.39 -0.02 0.39 15 26 H 0.03 1.25 8.03 -2.39 -0.02 1.23 15 27 H 0.02 0.98 7.01 -2.38 -0.02 0.96 15 28 H 0.25 14.43 8.31 -92.71 -0.77 13.66 15 Total: -1.00 -64.01 255.96 4.33 -59.68 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.13 Total: -0.80 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 4.39 Total: -18.24 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -1.90 Total: -89.54 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.73 kcal Total: -64.01 4.33 -59.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.251 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds