Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33847 * 122.44188 * 2 1 4 4 S 1.70614 * 110.96521 * 179.73431 * 3 2 1 5 5 C 1.75831 * 91.57173 * 0.24152 * 4 3 2 6 6 C 1.46448 * 125.46298 * 179.97438 * 5 4 3 7 7 O 1.21746 * 119.99872 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00504 * 0.03513 * 6 5 4 9 9 C 1.36884 * 120.00455 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99852 * 0.02562 * 9 8 6 11 11 C 1.38999 * 120.00259 * 179.97438 * 9 8 6 12 12 N 1.31395 * 120.00266 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47031 * 89.99708 * 13 11 9 15 15 H 1.48496 * 109.47200 * 210.00173 * 13 11 9 16 16 H 1.48504 * 109.46926 * 330.00059 * 13 11 9 17 17 C 1.36773 * 109.07062 * 0.02562 * 5 4 3 18 18 H 1.08992 * 109.46936 * 90.02307 * 1 2 3 19 19 H 1.08998 * 109.47290 * 210.02441 * 1 2 3 20 20 H 1.09001 * 109.47036 * 330.02292 * 1 2 3 21 21 H 1.08002 * 124.52090 * 0.02562 * 3 2 1 22 22 H 0.97002 * 119.99857 * 359.97438 * 8 6 5 23 23 H 0.96998 * 120.00154 * 179.97438 * 12 11 9 24 24 H 1.08003 * 123.35837 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1296 0.0000 4 16 3.8971 0.7901 0.0074 5 6 3.5947 -0.9420 0.0031 6 6 4.6235 -1.9841 0.0057 7 8 4.3009 -3.1581 0.0019 8 7 5.9276 -1.6438 0.0127 9 6 6.8893 -2.6179 0.0157 10 1 6.6030 -3.6593 0.0121 11 6 8.2342 -2.2668 0.0223 12 7 9.1573 -3.2019 0.0246 13 14 8.7293 -0.4656 0.0278 14 1 8.8542 0.0091 1.4293 15 1 10.0327 -0.3084 -0.6662 16 1 7.6944 0.3343 -0.6754 17 6 2.2444 -1.1599 -0.0042 18 1 -0.3633 -0.0004 -1.0276 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 1.8024 2.1235 0.0004 22 1 6.1847 -0.7085 0.0155 23 1 10.0958 -2.9569 0.0289 24 1 1.8018 -2.1450 -0.0085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936668.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -9.712640 kcal Electronic energy + Delta-G solvation = -11325.044595 eV Core-core repulsion = 9136.989996 eV Total energy + Delta-G solvation = -2188.054599 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.72215 -37.44177 -34.12434 -31.88299 -30.56993 -27.64251 -25.68460 -23.02267 -19.79570 -19.01749 -18.42043 -17.18074 -15.31841 -15.21175 -14.34095 -14.16035 -13.40941 -13.36142 -12.96311 -12.78828 -12.39395 -11.84978 -11.77710 -11.69005 -11.28728 -10.71622 -10.58134 -10.12291 -9.74803 -8.77172 -8.44341 -8.34141 -8.13297 -6.50056 -3.93471 0.94967 1.86731 2.26352 2.73809 2.98299 3.01405 3.07374 3.97167 4.07062 4.49212 5.15463 5.15884 5.26681 5.48542 5.65534 5.76683 5.83623 6.01582 6.31730 6.62993 6.73463 7.39045 7.97588 8.41969 8.76579 9.22947 9.66424 10.61205 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.009280 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.664324 B = 3016.644829 C = 3535.160447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.106 4.106 3 C -0.262 4.262 4 S 0.155 5.845 5 C -0.202 4.202 6 C 0.503 3.497 7 O -0.570 6.570 8 N -0.568 5.568 9 C -0.298 4.298 10 H 0.126 0.874 11 C 0.045 3.955 12 N -0.863 5.863 13 Si 0.873 3.127 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.265 1.265 17 C -0.096 4.096 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.160 0.840 22 H 0.370 0.630 23 H 0.278 0.722 24 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 11.401 -0.013 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.399 4.399 4 S 0.422 5.578 5 C -0.323 4.323 6 C 0.290 3.710 7 O -0.455 6.455 8 N -0.204 5.204 9 C -0.427 4.427 10 H 0.144 0.856 11 C -0.161 4.161 12 N -0.501 5.501 13 Si 0.698 3.302 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.190 1.190 17 C -0.128 4.128 18 H 0.085 0.915 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.177 0.823 22 H 0.204 0.796 23 H 0.089 0.911 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.243 11.455 -0.005 14.719 hybrid contribution -0.727 0.617 -0.028 0.954 sum -9.970 12.071 -0.033 15.656 Atomic orbital electron populations 1.20472 0.90017 1.02423 1.02023 1.18731 0.97376 0.91784 1.04096 1.24822 0.98249 1.02693 1.14181 1.82995 1.04523 1.00565 1.69717 1.25067 0.98654 0.96011 1.12610 1.16395 0.81369 0.87253 0.85935 1.90697 1.80818 1.17669 1.56345 1.42196 1.05560 1.08256 1.64400 1.19553 0.84869 0.91181 1.47090 0.85603 1.25111 0.95379 0.98500 0.97109 1.69606 1.01134 1.32719 1.46603 0.86737 0.79652 0.84266 0.79555 1.18958 1.19482 1.18975 1.20508 0.91141 0.99485 1.01683 0.91472 0.91474 0.91929 0.82275 0.79611 0.91107 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.13 36.01 0.36 -0.60 14 2 C -0.11 -1.54 5.78 -106.45 -0.62 -2.15 14 3 C -0.26 -3.60 10.67 29.19 0.31 -3.29 14 4 S 0.16 2.48 22.15 -107.50 -2.38 0.10 14 5 C -0.20 -4.06 6.45 -36.81 -0.24 -4.30 14 6 C 0.50 12.53 7.73 -12.96 -0.10 12.42 14 7 O -0.57 -16.22 16.41 5.15 0.08 -16.13 14 8 N -0.57 -14.27 5.08 -12.24 -0.06 -14.33 14 9 C -0.30 -8.47 10.16 -15.01 -0.15 -8.62 14 10 H 0.13 4.03 7.38 -52.48 -0.39 3.64 14 11 C 0.04 1.21 5.50 -17.46 -0.10 1.11 14 12 N -0.86 -24.57 13.96 55.50 0.77 -23.79 14 13 Si 0.87 19.15 27.74 -169.99 -4.71 14.43 14 14 H -0.26 -5.64 7.11 56.52 0.40 -5.24 14 15 H -0.27 -5.82 7.11 56.52 0.40 -5.41 14 16 H -0.26 -5.38 6.52 56.52 0.37 -5.01 14 17 C -0.10 -1.70 9.80 -40.40 -0.40 -2.10 14 18 H 0.07 0.65 8.14 -51.93 -0.42 0.22 14 19 H 0.07 0.67 8.13 -51.93 -0.42 0.25 14 20 H 0.06 0.56 8.12 -51.93 -0.42 0.14 14 21 H 0.16 1.70 8.06 -52.49 -0.42 1.28 14 22 H 0.37 8.33 4.87 -40.82 -0.20 8.13 14 23 H 0.28 7.25 8.31 -40.82 -0.34 6.91 14 24 H 0.15 2.60 8.06 -52.48 -0.42 2.17 14 LS Contribution 233.35 15.07 3.52 3.52 Total: -1.00 -31.07 233.35 -5.57 -36.64 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -1.87 Total: 7.07 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.92 Total: -7.51 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.71 Total: -38.12 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.08 Total: -16.13 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.38 Total: 0.10 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.07 -5.57 -36.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936668.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.929 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds