Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33847 * 122.44188 * 2 1 4 4 S 1.70614 * 110.96521 * 179.73431 * 3 2 1 5 5 C 1.75831 * 91.57173 * 0.24152 * 4 3 2 6 6 C 1.46448 * 125.46298 * 179.97438 * 5 4 3 7 7 O 1.21746 * 119.99872 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00504 * 0.03513 * 6 5 4 9 9 C 1.36884 * 120.00455 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99852 * 0.02562 * 9 8 6 11 11 C 1.38999 * 120.00259 * 179.97438 * 9 8 6 12 12 N 1.31395 * 120.00266 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47031 * 89.99708 * 13 11 9 15 15 H 1.48496 * 109.47200 * 210.00173 * 13 11 9 16 16 H 1.48504 * 109.46926 * 330.00059 * 13 11 9 17 17 C 1.36773 * 109.07062 * 0.02562 * 5 4 3 18 18 H 1.08992 * 109.46936 * 90.02307 * 1 2 3 19 19 H 1.08998 * 109.47290 * 210.02441 * 1 2 3 20 20 H 1.09001 * 109.47036 * 330.02292 * 1 2 3 21 21 H 1.08002 * 124.52090 * 0.02562 * 3 2 1 22 22 H 0.97002 * 119.99857 * 359.97438 * 8 6 5 23 23 H 0.96998 * 120.00154 * 179.97438 * 12 11 9 24 24 H 1.08003 * 123.35837 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1296 0.0000 4 16 3.8971 0.7901 0.0074 5 6 3.5947 -0.9420 0.0031 6 6 4.6235 -1.9841 0.0057 7 8 4.3009 -3.1581 0.0019 8 7 5.9276 -1.6438 0.0127 9 6 6.8893 -2.6179 0.0157 10 1 6.6030 -3.6593 0.0121 11 6 8.2342 -2.2668 0.0223 12 7 9.1573 -3.2019 0.0246 13 14 8.7293 -0.4656 0.0278 14 1 8.8542 0.0091 1.4293 15 1 10.0327 -0.3084 -0.6662 16 1 7.6944 0.3343 -0.6754 17 6 2.2444 -1.1599 -0.0042 18 1 -0.3633 -0.0004 -1.0276 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 1.8024 2.1235 0.0004 22 1 6.1847 -0.7085 0.0155 23 1 10.0958 -2.9569 0.0289 24 1 1.8018 -2.1450 -0.0085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936668.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -31.990372 kcal Electronic energy + Delta-G solvation = -11326.010630 eV Core-core repulsion = 9136.989996 eV Total energy + Delta-G solvation = -2189.020634 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.52702 -38.88337 -36.18620 -33.94911 -31.88189 -28.73860 -27.52726 -24.63475 -21.63070 -20.77692 -19.79956 -18.83012 -17.13073 -16.82171 -15.99436 -15.87867 -15.03954 -14.65362 -14.60893 -14.28253 -13.98329 -13.14396 -13.08888 -12.81726 -12.71902 -12.55063 -12.06746 -11.83607 -11.68484 -10.81731 -10.42791 -9.80029 -9.34061 -8.54807 -6.13439 -0.41196 0.52433 1.00885 1.23452 1.27356 1.36984 1.47479 2.12920 2.22472 2.70573 3.08493 3.98174 4.12310 4.28781 4.45772 4.74210 4.91258 4.96952 5.11914 5.37681 5.47638 5.55802 5.79851 6.40815 6.67639 7.17004 7.69904 8.61472 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.009280 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.664324 B = 3016.644829 C = 3535.160447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.122 4.122 3 C -0.224 4.224 4 S 0.195 5.805 5 C -0.269 4.269 6 C 0.509 3.491 7 O -0.621 6.621 8 N -0.571 5.571 9 C -0.335 4.335 10 H 0.065 0.935 11 C -0.004 4.004 12 N -0.915 5.915 13 Si 0.948 3.052 14 H -0.248 1.248 15 H -0.259 1.259 16 H -0.237 1.237 17 C -0.075 4.075 18 H 0.080 0.920 19 H 0.068 0.932 20 H 0.088 0.912 21 H 0.206 0.794 22 H 0.386 0.614 23 H 0.286 0.714 24 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.494 15.948 -0.026 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.362 4.362 4 S 0.462 5.538 5 C -0.389 4.389 6 C 0.298 3.702 7 O -0.509 6.509 8 N -0.209 5.209 9 C -0.464 4.464 10 H 0.083 0.917 11 C -0.206 4.206 12 N -0.553 5.553 13 Si 0.766 3.234 14 H -0.172 1.172 15 H -0.183 1.183 16 H -0.160 1.160 17 C -0.110 4.110 18 H 0.098 0.902 19 H 0.087 0.913 20 H 0.107 0.893 21 H 0.223 0.777 22 H 0.221 0.779 23 H 0.095 0.905 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.111 16.017 -0.018 19.494 hybrid contribution -0.433 -0.771 -0.023 0.885 sum -11.544 15.246 -0.041 19.124 Atomic orbital electron populations 1.20561 0.86908 1.03879 1.03328 1.18993 0.99478 0.90449 1.04516 1.25455 0.96833 1.04470 1.09416 1.82802 1.06161 0.96175 1.68636 1.24577 0.97959 0.97976 1.18388 1.17196 0.82103 0.87845 0.83084 1.90644 1.81944 1.20597 1.57715 1.41915 1.05074 1.08196 1.65713 1.19086 0.86738 0.89632 1.50936 0.91706 1.26097 0.94316 1.04738 0.95413 1.69753 1.01846 1.35859 1.47860 0.85609 0.80138 0.76824 0.80820 1.17181 1.18343 1.16012 1.20817 0.90747 1.00760 0.98635 0.90173 0.91318 0.89335 0.77715 0.77851 0.90458 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.13 71.24 0.72 -0.73 14 2 C -0.12 -3.01 5.78 -21.05 -0.12 -3.13 14 3 C -0.22 -4.87 10.67 66.82 0.71 -4.16 14 4 S 0.19 5.49 22.15 -56.49 -1.25 4.24 14 5 C -0.27 -10.59 6.45 24.07 0.16 -10.44 14 6 C 0.51 26.34 7.73 86.38 0.67 27.01 14 7 O -0.62 -37.77 16.41 -4.49 -0.07 -37.84 14 8 N -0.57 -29.59 5.08 -310.82 -1.58 -31.17 14 9 C -0.33 -20.32 10.16 84.09 0.85 -19.47 14 10 H 0.06 4.60 7.38 -2.91 -0.02 4.58 14 11 C 0.00 -0.25 5.50 84.94 0.47 0.22 14 12 N -0.91 -54.62 13.96 21.67 0.30 -54.32 14 13 Si 0.95 38.96 27.74 68.60 1.90 40.86 14 14 H -0.25 -9.54 7.11 99.48 0.71 -8.83 14 15 H -0.26 -10.19 7.11 99.48 0.71 -9.48 14 16 H -0.24 -8.54 6.52 99.48 0.65 -7.89 14 17 C -0.08 -2.56 9.80 21.74 0.21 -2.35 14 18 H 0.08 1.15 8.14 -2.39 -0.02 1.13 14 19 H 0.07 1.13 8.13 -2.39 -0.02 1.11 14 20 H 0.09 1.04 8.12 -2.39 -0.02 1.02 14 21 H 0.21 2.69 8.06 -2.91 -0.02 2.67 14 22 H 0.39 17.10 4.87 -92.71 -0.45 16.65 14 23 H 0.29 15.39 8.31 -92.71 -0.77 14.62 14 24 H 0.14 4.87 8.06 -2.91 -0.02 4.85 14 Total: -1.00 -74.52 233.35 3.69 -70.84 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.71 Total: 20.43 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.67 Total: -13.04 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.28 Total: -85.49 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.07 Total: -37.84 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.90 Total: 40.86 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.25 Total: 4.24 kcal Total: -74.52 3.69 -70.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936668.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.847 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds