Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76197 * 99.99957 * 2 1 4 4 C 1.39800 * 120.48937 * 179.97438 * 3 2 1 5 5 C 1.38112 * 118.48150 * 179.72725 * 4 3 2 6 6 N 1.32503 * 119.29895 * 0.25258 * 5 4 3 7 7 C 1.32516 * 120.94566 * 0.02562 * 6 5 4 8 8 N 1.38436 * 119.16869 * 180.02562 * 7 6 5 9 9 C 1.36992 * 120.00017 * 359.97438 * 8 7 6 10 10 H 1.08001 * 120.00237 * 359.97438 * 9 8 7 11 11 C 1.38836 * 119.99737 * 179.97438 * 9 8 7 12 12 N 1.31545 * 120.00235 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99744 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47405 * 60.00164 * 13 11 9 15 15 H 1.48507 * 109.46951 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47215 * 299.99877 * 13 11 9 17 17 N 1.32496 * 121.65576 * 359.97438 * 7 6 5 18 18 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.46744 * 300.00093 * 1 2 3 20 20 H 1.09001 * 109.46588 * 59.99979 * 1 2 3 21 21 H 1.08002 * 120.76285 * 0.02562 * 4 3 2 22 22 H 1.07998 * 120.34886 * 180.23092 * 5 4 3 23 23 H 0.97003 * 119.99879 * 179.97438 * 8 7 6 24 24 H 0.96994 * 120.00089 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4256 2.2246 0.0005 5 6 3.6176 3.5922 -0.0053 6 7 2.5635 4.3950 -0.0060 7 6 1.3328 3.9037 -0.0008 8 7 0.2579 4.7762 -0.0024 9 6 0.4738 6.1290 -0.0087 10 1 1.4826 6.5149 -0.0121 11 6 -0.6041 7.0039 -0.0108 12 7 -1.8328 6.5340 -0.0062 13 14 -0.3097 8.8486 -0.0187 14 1 0.4579 9.2222 -1.2338 15 1 -1.6144 9.5580 -0.0192 16 1 0.4612 9.2320 1.1913 17 7 1.1051 2.5985 0.0048 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3632 0.5138 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 4.2679 1.5486 0.0005 22 1 4.6164 4.0030 -0.0088 23 1 -0.6481 4.4296 0.0010 24 1 -2.5858 7.1453 -0.0080 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260220837.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = 49.454582 kcal Electronic energy + Delta-G solvation = -11374.340142 eV Core-core repulsion = 9221.143977 eV Total energy + Delta-G solvation = -2153.196164 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57986 -35.41727 -32.59329 -32.12663 -29.34140 -28.56612 -25.11438 -23.63158 -22.02431 -18.27021 -17.72698 -16.06514 -15.55019 -14.77267 -14.44585 -14.19040 -13.64834 -13.47261 -13.13789 -13.13200 -11.88328 -11.72270 -11.42712 -10.68883 -10.66037 -10.51659 -10.31673 -10.07858 -9.88759 -9.06596 -8.04376 -7.76073 -7.14129 -6.68614 -3.89437 1.99711 2.01029 2.20844 2.55261 3.13648 3.15197 3.17151 3.94772 4.59489 4.62752 5.22665 5.30884 5.43313 5.54261 5.93278 6.09983 6.16075 6.24771 6.55533 7.16842 7.36210 7.71612 8.02230 8.55032 8.92292 9.16550 9.73438 10.47242 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.052096 B = 0.008069 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.338181 B = 3469.179498 C = 3991.365867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.096 6.096 3 C 0.217 3.783 4 C -0.346 4.346 5 C 0.207 3.793 6 N -0.577 5.577 7 C 0.503 3.497 8 N -0.498 5.498 9 C -0.283 4.283 10 H 0.117 0.883 11 C 0.020 3.980 12 N -0.886 5.886 13 Si 0.943 3.057 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.270 1.270 17 N -0.600 5.600 18 H 0.092 0.908 19 H 0.086 0.914 20 H 0.086 0.914 21 H 0.123 0.877 22 H 0.150 0.850 23 H 0.410 0.590 24 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -7.134 -0.011 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.139 5.861 3 C -0.046 4.046 4 C -0.383 4.383 5 C 0.032 3.968 6 N -0.303 5.303 7 C 0.145 3.855 8 N -0.108 5.108 9 C -0.414 4.414 10 H 0.134 0.866 11 C -0.185 4.185 12 N -0.522 5.522 13 Si 0.769 3.231 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.195 1.195 17 N -0.331 5.331 18 H 0.110 0.890 19 H 0.105 0.895 20 H 0.105 0.895 21 H 0.141 0.859 22 H 0.168 0.832 23 H 0.247 0.753 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.988 -7.020 -0.008 8.074 hybrid contribution -0.524 1.173 -0.001 1.285 sum 3.463 -5.847 -0.009 6.796 Atomic orbital electron populations 1.23304 0.94146 1.04979 1.07121 1.85316 1.07893 1.00702 1.92154 1.22594 0.91830 0.96679 0.93545 1.21390 0.95807 0.97263 1.23854 1.22478 0.96907 0.89252 0.88115 1.67909 0.98101 1.39353 1.24948 1.18994 0.86740 0.84261 0.95469 1.40563 1.04719 1.04545 1.61008 1.19988 0.95706 0.79475 1.46225 0.86553 1.25478 0.94480 1.01673 0.96875 1.69679 0.98320 1.36984 1.47261 0.85716 0.77674 0.80375 0.79377 1.19497 1.20705 1.19502 1.67924 1.33964 1.02712 1.28450 0.88956 0.89471 0.89490 0.85873 0.83237 0.75275 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.68 101.05 0.98 -0.84 14 2 S -0.10 -1.53 22.74 -107.50 -2.44 -3.98 14 3 C 0.22 4.39 7.01 -16.49 -0.12 4.28 14 4 C -0.35 -6.49 9.94 -39.04 -0.39 -6.88 14 5 C 0.21 4.04 11.28 -17.31 -0.20 3.84 14 6 N -0.58 -13.73 9.09 -13.99 -0.13 -13.85 14 7 C 0.50 12.57 8.38 -322.73 -2.71 9.87 14 8 N -0.50 -13.10 5.43 -12.79 -0.07 -13.17 14 9 C -0.28 -7.56 9.69 -15.02 -0.15 -7.70 14 10 H 0.12 3.12 7.04 -52.49 -0.37 2.75 14 11 C 0.02 0.51 5.50 -17.45 -0.10 0.41 14 12 N -0.89 -23.63 13.05 55.49 0.72 -22.90 14 13 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 14 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 14 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 17 N -0.60 -13.74 9.32 -12.68 -0.12 -13.86 14 18 H 0.09 1.02 8.14 -51.92 -0.42 0.60 14 19 H 0.09 1.34 8.13 -51.92 -0.42 0.92 14 20 H 0.09 1.34 8.14 -51.92 -0.42 0.92 14 21 H 0.12 1.95 8.06 -52.49 -0.42 1.53 14 22 H 0.15 2.28 8.06 -52.49 -0.42 1.86 14 23 H 0.41 10.87 8.01 -40.82 -0.33 10.54 14 24 H 0.28 6.97 8.31 -40.82 -0.34 6.63 14 LS Contribution 235.88 15.07 3.55 3.55 Total: -1.00 -28.36 235.88 -8.12 -36.47 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -1.94 Total: 9.73 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.67 Total: 2.98 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.41 Total: -63.78 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.44 Total: -3.98 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.36 -8.12 -36.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220837.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.927 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds