Wall clock time and date at job start Sun Mar 29 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47257 * 240.00024 * 3 2 1 5 5 H 1.48507 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47416 * 119.99955 * 3 2 1 7 7 C 1.37883 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46583 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.39133 * 120.00367 * 180.02562 * 11 10 9 13 13 C 1.39111 * 119.67734 * 359.97438 * 12 11 10 14 14 C 1.38315 * 119.12093 * 180.02562 * 13 12 11 15 15 C 1.39039 * 118.48635 * 0.02562 * 14 13 12 16 16 F 1.35097 * 120.35909 * 179.97438 * 15 14 13 17 17 C 1.38215 * 119.28365 * 0.02562 * 15 14 13 18 18 N 1.31999 * 120.82034 * 0.02562 * 17 15 14 19 19 H 0.97002 * 119.99510 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47500 * 60.00705 * 9 7 2 21 21 H 1.09002 * 109.47209 * 299.99783 * 9 7 2 22 22 H 1.08999 * 109.47441 * 60.00066 * 10 9 7 23 23 H 1.09004 * 109.47364 * 299.99529 * 10 9 7 24 24 H 0.96999 * 119.99548 * 359.97438 * 11 10 9 25 25 H 1.08001 * 120.44047 * 0.27675 * 13 12 11 26 26 H 1.08003 * 120.75537 * 180.02562 * 14 13 12 27 27 H 1.07998 * 119.59404 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 2.2083 -6.1358 -0.0007 13 6 3.5994 -6.1281 -0.0003 14 6 4.2792 -7.3326 -0.0004 15 6 3.5410 -8.5108 -0.0015 16 9 4.1662 -9.7083 -0.0022 17 6 2.1604 -8.4435 -0.0030 18 7 1.5401 -7.2784 -0.0039 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8719 -3.6044 0.8894 23 1 2.8719 -3.6044 -0.8906 24 1 0.5427 -4.9308 -0.0011 25 1 4.1414 -5.1939 0.0043 26 1 5.3590 -7.3574 0.0004 27 1 1.5820 -9.3555 -0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164172.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:39 Heat of formation + Delta-G solvation = -36.300055 kcal Electronic energy + Delta-G solvation = -12758.856112 eV Core-core repulsion = 10236.987176 eV Total energy + Delta-G solvation = -2521.868935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.70950 -41.07769 -37.33797 -35.03859 -33.42255 -32.10520 -29.54502 -26.56635 -25.02869 -23.53622 -22.48884 -19.06237 -18.42506 -18.35906 -17.73413 -16.66129 -16.52633 -15.89714 -15.68773 -15.45252 -14.55371 -14.50117 -14.27054 -14.16024 -13.39975 -13.12179 -12.95676 -12.51523 -12.35027 -11.59538 -11.40533 -10.97938 -10.85938 -10.55511 -10.55246 -8.58767 -8.23206 -6.34622 0.16686 0.27370 1.43584 1.45884 1.53631 2.17699 2.44983 2.76864 3.12239 3.29829 3.62853 3.86961 4.03851 4.21034 4.43949 4.51863 4.73050 4.85510 4.91733 5.05456 5.37069 5.57800 5.61032 5.74855 5.96384 6.16362 6.59964 6.80935 7.08996 7.35514 8.88948 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.083795 B = 0.005225 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.067111 B = 5357.359565 C = 5670.980356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.019 3.981 10 C 0.147 3.853 11 N -0.719 5.719 12 C 0.382 3.618 13 C -0.221 4.221 14 C -0.054 4.054 15 C -0.037 4.037 16 F -0.141 7.141 17 C 0.125 3.875 18 N -0.550 5.550 19 H 0.264 0.736 20 H 0.000 1.000 21 H 0.000 1.000 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.401 0.599 25 H 0.152 0.848 26 H 0.172 0.828 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 -13.024 0.005 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.089 0.911 9 C -0.019 4.019 10 C 0.024 3.976 11 N -0.349 5.349 12 C 0.146 3.854 13 C -0.246 4.246 14 C -0.081 4.081 15 C -0.062 4.062 16 F -0.120 7.120 17 C -0.035 4.035 18 N -0.268 5.268 19 H 0.073 0.927 20 H 0.018 0.982 21 H 0.018 0.982 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.236 0.764 25 H 0.169 0.831 26 H 0.189 0.811 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.181 -12.703 0.003 14.592 hybrid contribution 0.478 0.739 0.003 0.880 sum 7.658 -11.963 0.006 14.205 Atomic orbital electron populations 1.70090 1.07892 1.28024 1.51150 1.25962 0.95722 1.03461 0.94514 0.85455 0.78181 0.77831 0.79327 1.18990 1.21266 1.19000 1.21475 0.93955 0.91421 1.51283 0.91086 1.19123 0.94557 0.92386 0.95797 1.21434 0.94985 0.80514 1.00685 1.44969 1.09221 1.02277 1.78445 1.18801 0.89513 0.86280 0.90842 1.21539 0.92436 1.00242 1.10384 1.21643 1.02299 0.89800 0.94308 1.18456 0.92168 0.81567 1.14015 1.91458 1.82571 1.42995 1.94959 1.22859 0.90706 0.95960 0.93947 1.67249 1.40548 0.97528 1.21509 0.92695 0.98175 0.98183 0.91898 0.91910 0.76372 0.83052 0.81085 0.79569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.50 15 2 C 0.00 0.10 5.46 84.66 0.46 0.56 15 3 Si 0.97 42.24 29.54 68.60 2.03 44.26 15 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 7 C -0.54 -28.87 9.11 25.60 0.23 -28.63 15 8 H 0.07 3.52 7.74 -2.92 -0.02 3.49 15 9 C 0.02 0.93 5.09 29.85 0.15 1.08 15 10 C 0.15 5.57 4.83 86.38 0.42 5.99 15 11 N -0.72 -25.20 5.73 -344.99 -1.98 -27.18 15 12 C 0.38 12.21 7.65 133.03 1.02 13.23 15 13 C -0.22 -5.94 9.33 22.50 0.21 -5.73 15 14 C -0.05 -1.23 10.15 22.48 0.23 -1.00 15 15 C -0.04 -0.90 7.34 22.46 0.16 -0.73 15 16 F -0.14 -3.27 17.28 44.97 0.78 -2.49 15 17 C 0.12 3.13 11.16 84.66 0.94 4.08 15 18 N -0.55 -17.06 10.39 -193.04 -2.01 -19.07 15 19 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 20 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 21 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 22 H 0.06 2.27 7.92 -2.39 -0.02 2.25 15 23 H 0.06 2.27 7.93 -2.38 -0.02 2.25 15 24 H 0.40 14.36 8.60 -92.71 -0.80 13.56 15 25 H 0.15 3.75 6.71 -2.91 -0.02 3.73 15 26 H 0.17 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.19 3.49 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -60.55 247.27 3.32 -57.23 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.39 Total: 12.91 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 3.83 Total: -11.17 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.70 Total: -100.75 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -60.55 3.32 -57.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164172.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.931 kcal (2) G-P(sol) polarization free energy of solvation -60.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds