Wall clock time and date at job start Sun Mar 29 2020 21:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99899 * 2 1 4 4 H 1.48493 * 109.46926 * 269.99975 * 3 2 1 5 5 H 1.48500 * 109.47092 * 29.99918 * 3 2 1 6 6 H 1.48503 * 109.47001 * 150.00074 * 3 2 1 7 7 C 1.37881 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00193 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99689 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47327 * 179.97438 * 9 7 2 11 11 N 1.46490 * 109.47558 * 179.97438 * 10 9 7 12 12 C 1.39154 * 120.00285 * 180.02562 * 11 10 9 13 13 N 1.32362 * 119.71562 * 0.28746 * 12 11 10 14 14 C 1.31981 * 121.64815 * 180.33717 * 13 12 11 15 15 C 1.38027 * 120.89520 * 359.66402 * 14 13 12 16 16 C 1.38864 * 119.34904 * 0.02562 * 15 14 13 17 17 C 1.38484 * 118.48114 * 0.02562 * 16 15 14 18 18 F 1.35104 * 120.47067 * 180.02562 * 17 16 15 19 19 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47352 * 59.99638 * 9 7 2 21 21 H 1.08998 * 109.47353 * 299.99766 * 9 7 2 22 22 H 1.09004 * 109.46764 * 59.99812 * 10 9 7 23 23 H 1.08998 * 109.47148 * 300.00425 * 10 9 7 24 24 H 0.97007 * 120.00061 * 359.97438 * 11 10 9 25 25 H 1.07997 * 119.55428 * 179.67723 * 14 13 12 26 26 H 1.08002 * 120.32550 * 179.97438 * 15 14 13 27 27 H 1.07993 * 120.76321 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0217 -2.6365 -0.0001 11 7 5.4865 -2.6365 -0.0001 12 6 6.1824 -3.8416 -0.0008 13 7 5.5149 -4.9846 -0.0071 14 6 6.1359 -6.1492 -0.0014 15 6 7.5145 -6.2172 0.0046 16 6 8.2540 -5.0419 0.0051 17 6 7.5754 -3.8347 0.0001 18 9 8.2547 -2.6669 -0.0002 19 1 -0.4850 0.8400 0.0004 20 1 3.8746 -0.6807 0.8905 21 1 3.8752 -0.6796 -0.8894 22 1 3.6586 -3.1501 -0.8904 23 1 3.6580 -3.1506 0.8896 24 1 5.9716 -1.7964 -0.0005 25 1 5.5576 -7.0613 -0.0016 26 1 8.0132 -7.1752 0.0097 27 1 9.3336 -5.0685 0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165149.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:31 Heat of formation + Delta-G solvation = -13.924160 kcal Electronic energy + Delta-G solvation = -12999.125480 eV Core-core repulsion = 10478.226837 eV Total energy + Delta-G solvation = -2520.898644 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.73852 -39.88079 -36.00368 -33.10188 -31.98806 -30.92294 -28.59783 -25.00909 -23.32532 -22.33224 -20.66698 -17.89367 -17.21169 -17.07206 -16.45616 -15.76005 -14.98339 -14.28741 -14.20295 -14.01737 -13.70752 -13.17876 -12.88682 -12.61469 -12.22779 -11.50764 -11.38481 -10.65694 -10.11293 -9.99828 -9.84371 -9.46162 -9.43954 -9.29192 -8.61083 -7.42461 -6.10956 -4.10869 1.14276 1.39490 3.26513 3.34254 3.36349 3.44817 3.85720 4.27351 4.38721 4.56465 4.79111 5.04671 5.22248 5.33269 5.72655 5.87691 6.04560 6.12894 6.23446 6.55463 6.58973 7.03869 7.24714 7.37419 7.59011 7.69323 8.30575 8.46027 8.93111 9.49535 11.01987 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.053989 B = 0.006709 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.504047 B = 4172.491066 C = 4670.545398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.025 4.025 10 C 0.142 3.858 11 N -0.712 5.712 12 C 0.392 3.608 13 N -0.518 5.518 14 C 0.145 3.855 15 C -0.228 4.228 16 C -0.065 4.065 17 C -0.038 4.038 18 F -0.140 7.140 19 H 0.265 0.735 20 H 0.021 0.979 21 H 0.017 0.983 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.408 0.592 25 H 0.160 0.840 26 H 0.136 0.864 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.838 -9.323 0.041 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.062 4.062 10 C 0.020 3.980 11 N -0.342 5.342 12 C 0.152 3.848 13 N -0.236 5.236 14 C -0.013 4.013 15 C -0.251 4.251 16 C -0.092 4.092 17 C -0.065 4.065 18 F -0.119 7.119 19 H 0.075 0.925 20 H 0.039 0.961 21 H 0.035 0.965 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.244 0.756 25 H 0.177 0.823 26 H 0.153 0.847 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.535 -9.091 0.036 17.144 hybrid contribution 1.592 1.404 -0.015 2.123 sum 16.127 -7.687 0.021 17.866 Atomic orbital electron populations 1.69901 1.06260 1.27056 1.50484 1.24993 0.94763 0.99133 0.94356 0.86761 0.80298 0.83556 0.78545 1.20214 1.21234 1.19093 1.20892 0.88525 0.94895 1.51622 0.90551 1.19816 0.98023 0.91557 0.96834 1.21486 0.75190 0.99840 1.01526 1.45184 1.08330 1.03594 1.77060 1.18606 0.86309 0.88366 0.91502 1.67417 1.39243 0.96874 1.20094 1.22529 0.92030 0.94803 0.91950 1.21635 0.95028 0.98310 1.10169 1.21314 1.00772 0.90697 0.96398 1.18028 0.89236 0.82629 1.16629 1.91444 1.79622 1.45862 1.94979 0.92548 0.96061 0.96490 0.91983 0.91961 0.75629 0.82328 0.84660 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.73 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 15 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 15 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 15 9 C -0.02 -0.58 4.15 -27.88 -0.12 -0.69 15 10 C 0.14 2.93 5.64 -4.05 -0.02 2.91 15 11 N -0.71 -12.78 5.71 -60.35 -0.34 -13.12 15 12 C 0.39 6.58 7.49 -154.84 -1.16 5.42 15 13 N -0.52 -8.51 9.57 -12.36 -0.12 -8.63 15 14 C 0.15 1.79 11.17 -17.56 -0.20 1.60 15 15 C -0.23 -2.38 10.10 -39.43 -0.40 -2.78 15 16 C -0.07 -0.76 10.15 -39.26 -0.40 -1.16 15 17 C -0.04 -0.56 7.35 -39.10 -0.29 -0.85 15 18 F -0.14 -2.08 16.65 2.25 0.04 -2.04 15 19 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 20 H 0.02 0.50 7.20 -51.93 -0.37 0.12 15 21 H 0.02 0.39 7.57 -51.93 -0.39 0.00 15 22 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.41 6.78 7.94 -40.82 -0.32 6.46 15 25 H 0.16 1.45 8.06 -52.49 -0.42 1.02 15 26 H 0.14 0.97 8.06 -52.49 -0.42 0.54 15 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 15 LS Contribution 244.76 15.07 3.69 3.69 Total: -1.00 -31.01 244.76 -6.43 -37.44 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.79 Total: 1.29 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.01 Total: -8.69 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.31 Total: -48.49 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.01 -6.43 -37.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165149.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.518 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds