Wall clock time and date at job start Sun Mar 29 2020 21:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99899 * 2 1 4 4 H 1.48493 * 109.46926 * 269.99975 * 3 2 1 5 5 H 1.48500 * 109.47092 * 29.99918 * 3 2 1 6 6 H 1.48503 * 109.47001 * 150.00074 * 3 2 1 7 7 C 1.37881 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00193 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99689 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47327 * 179.97438 * 9 7 2 11 11 N 1.46490 * 109.47558 * 179.97438 * 10 9 7 12 12 C 1.39154 * 120.00285 * 180.02562 * 11 10 9 13 13 N 1.32362 * 119.71562 * 0.28746 * 12 11 10 14 14 C 1.31981 * 121.64815 * 180.33717 * 13 12 11 15 15 C 1.38027 * 120.89520 * 359.66402 * 14 13 12 16 16 C 1.38864 * 119.34904 * 0.02562 * 15 14 13 17 17 C 1.38484 * 118.48114 * 0.02562 * 16 15 14 18 18 F 1.35104 * 120.47067 * 180.02562 * 17 16 15 19 19 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47352 * 59.99638 * 9 7 2 21 21 H 1.08998 * 109.47353 * 299.99766 * 9 7 2 22 22 H 1.09004 * 109.46764 * 59.99812 * 10 9 7 23 23 H 1.08998 * 109.47148 * 300.00425 * 10 9 7 24 24 H 0.97007 * 120.00061 * 359.97438 * 11 10 9 25 25 H 1.07997 * 119.55428 * 179.67723 * 14 13 12 26 26 H 1.08002 * 120.32550 * 179.97438 * 15 14 13 27 27 H 1.07993 * 120.76321 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0217 -2.6365 -0.0001 11 7 5.4865 -2.6365 -0.0001 12 6 6.1824 -3.8416 -0.0008 13 7 5.5149 -4.9846 -0.0071 14 6 6.1359 -6.1492 -0.0014 15 6 7.5145 -6.2172 0.0046 16 6 8.2540 -5.0419 0.0051 17 6 7.5754 -3.8347 0.0001 18 9 8.2547 -2.6669 -0.0002 19 1 -0.4850 0.8400 0.0004 20 1 3.8746 -0.6807 0.8905 21 1 3.8752 -0.6796 -0.8894 22 1 3.6586 -3.1501 -0.8904 23 1 3.6580 -3.1506 0.8896 24 1 5.9716 -1.7964 -0.0005 25 1 5.5576 -7.0613 -0.0016 26 1 8.0132 -7.1752 0.0097 27 1 9.3336 -5.0685 0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165149.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:31 Heat of formation + Delta-G solvation = -34.647271 kcal Electronic energy + Delta-G solvation = -13000.024102 eV Core-core repulsion = 10478.226837 eV Total energy + Delta-G solvation = -2521.797265 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.83026 -40.95957 -37.44119 -35.07129 -33.12078 -32.55755 -29.98822 -26.70404 -24.49583 -23.56395 -22.42995 -19.25579 -18.88875 -18.12511 -17.87764 -16.89954 -16.35176 -15.90438 -15.84628 -15.48507 -14.73668 -14.61068 -14.47367 -13.90291 -13.39844 -13.17468 -13.16199 -12.34502 -12.04873 -11.82485 -11.53083 -11.19558 -10.80445 -10.59574 -10.46408 -8.64273 -8.32930 -6.39271 0.13667 0.38981 1.35442 1.37176 1.48718 2.19772 2.33389 2.82512 3.01748 3.19741 3.55305 3.88179 4.15149 4.33520 4.42007 4.45580 4.73669 4.81071 5.01018 5.16239 5.18146 5.38258 5.50482 5.66546 6.09356 6.20495 6.36782 6.67882 7.20535 7.25167 8.83575 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.053989 B = 0.006709 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.504047 B = 4172.491066 C = 4670.545398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.035 0.965 9 C -0.016 4.016 10 C 0.166 3.834 11 N -0.722 5.722 12 C 0.362 3.638 13 N -0.555 5.555 14 C 0.131 3.869 15 C -0.201 4.201 16 C -0.059 4.059 17 C -0.051 4.051 18 F -0.145 7.145 19 H 0.269 0.731 20 H 0.028 0.972 21 H 0.027 0.973 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.412 0.588 25 H 0.188 0.812 26 H 0.181 0.819 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.829 -9.924 0.042 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.053 0.947 9 C -0.054 4.054 10 C 0.042 3.958 11 N -0.355 5.355 12 C 0.125 3.875 13 N -0.273 5.273 14 C -0.026 4.026 15 C -0.223 4.223 16 C -0.086 4.086 17 C -0.078 4.078 18 F -0.124 7.124 19 H 0.078 0.922 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.248 0.752 25 H 0.205 0.795 26 H 0.198 0.802 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 17.571 -9.742 0.038 20.091 hybrid contribution 0.694 1.341 -0.017 1.510 sum 18.265 -8.402 0.020 20.105 Atomic orbital electron populations 1.70056 1.08308 1.28400 1.51951 1.25998 0.95668 1.03541 0.93774 0.85599 0.79462 0.77936 0.79266 1.19065 1.20804 1.16931 1.21204 0.91171 0.93563 1.51387 0.94659 1.19668 0.94809 0.93571 0.97369 1.20893 0.77425 0.97542 0.99942 1.44819 1.06704 1.04662 1.79305 1.18774 0.87285 0.87989 0.93468 1.67374 1.40967 0.98043 1.20950 1.23175 0.93646 0.94427 0.91352 1.22146 0.94134 0.99836 1.06210 1.21802 1.02588 0.89600 0.94568 1.18234 0.88525 0.83646 1.17411 1.91428 1.79474 1.46385 1.95128 0.92250 0.95324 0.95439 0.93649 0.93650 0.75163 0.79493 0.80184 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.62 13.96 21.45 0.30 -59.32 15 2 C 0.01 0.45 5.47 84.65 0.46 0.91 15 3 Si 0.95 44.08 27.47 68.60 1.88 45.97 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 6 H -0.25 -10.47 6.54 99.48 0.65 -9.82 15 7 C -0.53 -31.24 9.66 25.60 0.25 -31.00 15 8 H 0.04 2.27 7.99 -2.91 -0.02 2.25 15 9 C -0.02 -0.78 4.15 29.85 0.12 -0.65 15 10 C 0.17 7.08 5.64 86.38 0.49 7.56 15 11 N -0.72 -26.13 5.71 -344.84 -1.97 -28.10 15 12 C 0.36 12.01 7.49 133.06 1.00 13.01 15 13 N -0.55 -17.93 9.57 -193.03 -1.85 -19.78 15 14 C 0.13 2.90 11.17 84.62 0.95 3.84 15 15 C -0.20 -3.30 10.10 22.37 0.23 -3.07 15 16 C -0.06 -1.15 10.15 22.48 0.23 -0.92 15 17 C -0.05 -1.42 7.35 22.58 0.17 -1.25 15 18 F -0.14 -4.10 16.65 44.97 0.75 -3.35 15 19 H 0.27 15.68 8.31 -92.71 -0.77 14.91 15 20 H 0.03 1.31 7.20 -2.38 -0.02 1.30 15 21 H 0.03 1.24 7.57 -2.39 -0.02 1.23 15 22 H 0.05 2.04 8.14 -2.38 -0.02 2.02 15 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.41 13.65 7.94 -92.70 -0.74 12.91 15 25 H 0.19 2.84 8.06 -2.91 -0.02 2.82 15 26 H 0.18 1.40 8.06 -2.91 -0.02 1.37 15 27 H 0.17 2.14 8.06 -2.91 -0.02 2.11 15 Total: -1.00 -69.56 244.76 3.39 -66.17 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.39 Total: 9.97 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.88 Total: -11.57 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.52 Total: -107.20 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.75 Total: -3.35 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -69.56 3.39 -66.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165149.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.526 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds