Wall clock time and date at job start Sun Mar 29 2020 21:27:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86803 * 119.99899 * 2 1
4 4 H 1.48493 * 109.46926 * 269.99975 * 3 2 1
5 5 H 1.48500 * 109.47092 * 29.99918 * 3 2 1
6 6 H 1.48503 * 109.47001 * 150.00074 * 3 2 1
7 7 C 1.37881 * 119.99909 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00193 * 359.97438 * 7 2 1
9 9 C 1.50695 * 119.99689 * 180.02562 * 7 2 1
10 10 C 1.53002 * 109.47327 * 179.97438 * 9 7 2
11 11 N 1.46490 * 109.47558 * 179.97438 * 10 9 7
12 12 C 1.39154 * 120.00285 * 180.02562 * 11 10 9
13 13 N 1.32362 * 119.71562 * 0.28746 * 12 11 10
14 14 C 1.31981 * 121.64815 * 180.33717 * 13 12 11
15 15 C 1.38027 * 120.89520 * 359.66402 * 14 13 12
16 16 C 1.38864 * 119.34904 * 0.02562 * 15 14 13
17 17 C 1.38484 * 118.48114 * 0.02562 * 16 15 14
18 18 F 1.35104 * 120.47067 * 180.02562 * 17 16 15
19 19 H 0.96998 * 120.00193 * 359.97438 * 1 2 3
20 20 H 1.09004 * 109.47352 * 59.99638 * 9 7 2
21 21 H 1.08998 * 109.47353 * 299.99766 * 9 7 2
22 22 H 1.09004 * 109.46764 * 59.99812 * 10 9 7
23 23 H 1.08998 * 109.47148 * 300.00425 * 10 9 7
24 24 H 0.97007 * 120.00061 * 359.97438 * 11 10 9
25 25 H 1.07997 * 119.55428 * 179.67723 * 14 13 12
26 26 H 1.08002 * 120.32550 * 179.97438 * 15 14 13
27 27 H 1.07993 * 120.76321 * 180.02562 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6527 0.7000
6 1 3.5468 1.4402 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 1.4646 -2.1294 -0.0005
9 6 3.5115 -1.1940 0.0000
10 6 4.0217 -2.6365 -0.0001
11 7 5.4865 -2.6365 -0.0001
12 6 6.1824 -3.8416 -0.0008
13 7 5.5149 -4.9846 -0.0071
14 6 6.1359 -6.1492 -0.0014
15 6 7.5145 -6.2172 0.0046
16 6 8.2540 -5.0419 0.0051
17 6 7.5754 -3.8347 0.0001
18 9 8.2547 -2.6669 -0.0002
19 1 -0.4850 0.8400 0.0004
20 1 3.8746 -0.6807 0.8905
21 1 3.8752 -0.6796 -0.8894
22 1 3.6586 -3.1501 -0.8904
23 1 3.6580 -3.1506 0.8896
24 1 5.9716 -1.7964 -0.0005
25 1 5.5576 -7.0613 -0.0016
26 1 8.0132 -7.1752 0.0097
27 1 9.3336 -5.0685 0.0094
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261165149.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:27:31
Heat of formation + Delta-G solvation = -34.647271 kcal
Electronic energy + Delta-G solvation = -13000.024102 eV
Core-core repulsion = 10478.226837 eV
Total energy + Delta-G solvation = -2521.797265 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 210.086 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-49.83026 -40.95957 -37.44119 -35.07129 -33.12078 -32.55755 -29.98822 -26.70404
-24.49583 -23.56395 -22.42995 -19.25579 -18.88875 -18.12511 -17.87764 -16.89954
-16.35176 -15.90438 -15.84628 -15.48507 -14.73668 -14.61068 -14.47367 -13.90291
-13.39844 -13.17468 -13.16199 -12.34502 -12.04873 -11.82485 -11.53083 -11.19558
-10.80445 -10.59574 -10.46408 -8.64273 -8.32930 -6.39271 0.13667 0.38981
1.35442 1.37176 1.48718 2.19772 2.33389 2.82512 3.01748 3.19741
3.55305 3.88179 4.15149 4.33520 4.42007 4.45580 4.73669 4.81071
5.01018 5.16239 5.18146 5.38258 5.50482 5.66546 6.09356 6.20495
6.36782 6.67882 7.20535 7.25167 8.83575
Molecular weight = 210.09amu
Principal moments of inertia in cm(-1)
A = 0.053989 B = 0.006709 C = 0.005994
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 518.504047 B = 4172.491066 C = 4670.545398
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C 0.008 3.992
3 Si 0.955 3.045
4 H -0.266 1.266
5 H -0.282 1.282
6 H -0.246 1.246
7 C -0.535 4.535
8 H 0.035 0.965
9 C -0.016 4.016
10 C 0.166 3.834
11 N -0.722 5.722
12 C 0.362 3.638
13 N -0.555 5.555
14 C 0.131 3.869
15 C -0.201 4.201
16 C -0.059 4.059
17 C -0.051 4.051
18 F -0.145 7.145
19 H 0.269 0.731
20 H 0.028 0.972
21 H 0.027 0.973
22 H 0.045 0.955
23 H 0.045 0.955
24 H 0.412 0.588
25 H 0.188 0.812
26 H 0.181 0.819
27 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.829 -9.924 0.042 21.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.587 5.587
2 C -0.190 4.190
3 Si 0.777 3.223
4 H -0.191 1.191
5 H -0.208 1.208
6 H -0.169 1.169
7 C -0.573 4.573
8 H 0.053 0.947
9 C -0.054 4.054
10 C 0.042 3.958
11 N -0.355 5.355
12 C 0.125 3.875
13 N -0.273 5.273
14 C -0.026 4.026
15 C -0.223 4.223
16 C -0.086 4.086
17 C -0.078 4.078
18 F -0.124 7.124
19 H 0.078 0.922
20 H 0.047 0.953
21 H 0.046 0.954
22 H 0.064 0.936
23 H 0.064 0.936
24 H 0.248 0.752
25 H 0.205 0.795
26 H 0.198 0.802
27 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges 17.571 -9.742 0.038 20.091
hybrid contribution 0.694 1.341 -0.017 1.510
sum 18.265 -8.402 0.020 20.105
Atomic orbital electron populations
1.70056 1.08308 1.28400 1.51951 1.25998 0.95668 1.03541 0.93774
0.85599 0.79462 0.77936 0.79266 1.19065 1.20804 1.16931 1.21204
0.91171 0.93563 1.51387 0.94659 1.19668 0.94809 0.93571 0.97369
1.20893 0.77425 0.97542 0.99942 1.44819 1.06704 1.04662 1.79305
1.18774 0.87285 0.87989 0.93468 1.67374 1.40967 0.98043 1.20950
1.23175 0.93646 0.94427 0.91352 1.22146 0.94134 0.99836 1.06210
1.21802 1.02588 0.89600 0.94568 1.18234 0.88525 0.83646 1.17411
1.91428 1.79474 1.46385 1.95128 0.92250 0.95324 0.95439 0.93649
0.93650 0.75163 0.79493 0.80184 0.80832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.62 13.96 21.45 0.30 -59.32 15
2 C 0.01 0.45 5.47 84.65 0.46 0.91 15
3 Si 0.95 44.08 27.47 68.60 1.88 45.97 15
4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15
5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15
6 H -0.25 -10.47 6.54 99.48 0.65 -9.82 15
7 C -0.53 -31.24 9.66 25.60 0.25 -31.00 15
8 H 0.04 2.27 7.99 -2.91 -0.02 2.25 15
9 C -0.02 -0.78 4.15 29.85 0.12 -0.65 15
10 C 0.17 7.08 5.64 86.38 0.49 7.56 15
11 N -0.72 -26.13 5.71 -344.84 -1.97 -28.10 15
12 C 0.36 12.01 7.49 133.06 1.00 13.01 15
13 N -0.55 -17.93 9.57 -193.03 -1.85 -19.78 15
14 C 0.13 2.90 11.17 84.62 0.95 3.84 15
15 C -0.20 -3.30 10.10 22.37 0.23 -3.07 15
16 C -0.06 -1.15 10.15 22.48 0.23 -0.92 15
17 C -0.05 -1.42 7.35 22.58 0.17 -1.25 15
18 F -0.14 -4.10 16.65 44.97 0.75 -3.35 15
19 H 0.27 15.68 8.31 -92.71 -0.77 14.91 15
20 H 0.03 1.31 7.20 -2.38 -0.02 1.30 15
21 H 0.03 1.24 7.57 -2.39 -0.02 1.23 15
22 H 0.05 2.04 8.14 -2.38 -0.02 2.02 15
23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15
24 H 0.41 13.65 7.94 -92.70 -0.74 12.91 15
25 H 0.19 2.84 8.06 -2.91 -0.02 2.82 15
26 H 0.18 1.40 8.06 -2.91 -0.02 1.37 15
27 H 0.17 2.14 8.06 -2.91 -0.02 2.11 15
Total: -1.00 -69.56 244.76 3.39 -66.17
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: 0.39 Total: 9.97 kcal
Atomic # 6 Polarization: -15.45 SS G_CDS: 3.88 Total: -11.57 kcal
Atomic # 7 Polarization: -103.68 SS G_CDS: -3.52 Total: -107.20 kcal
Atomic # 9 Polarization: -4.10 SS G_CDS: 0.75 Total: -3.35 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal
Total: -69.56 3.39 -66.17 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261165149.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.526 kcal
(2) G-P(sol) polarization free energy of solvation -69.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.038 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds