Wall clock time and date at job start Sun Mar 29 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48500 * 109.47073 * 270.00431 * 3 2 1 5 5 H 1.48499 * 109.47044 * 150.00403 * 3 2 1 6 6 H 1.48498 * 109.47171 * 30.00192 * 3 2 1 7 7 C 1.38816 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99689 * 149.94574 * 7 2 1 9 9 N 1.36931 * 119.99636 * 329.94486 * 7 2 1 10 10 C 1.45719 * 117.57148 * 336.46130 * 9 7 2 11 11 C 1.53120 * 109.32339 * 218.09589 * 10 9 7 12 12 C 1.52908 * 108.28686 * 305.53969 * 11 10 9 13 13 C 1.52858 * 110.01389 * 66.50953 * 12 11 10 14 14 H 1.09008 * 111.18881 * 69.00918 * 13 12 11 15 15 C 1.52127 * 107.75145 * 192.12933 * 13 12 11 16 16 O 1.21275 * 125.14920 * 277.91256 * 15 13 12 17 17 N 1.35471 * 109.64352 * 97.53738 * 15 13 12 18 18 C 1.47067 * 111.11091 * 1.78196 * 17 15 13 19 19 C 1.43881 * 117.56362 * 156.20014 * 9 7 2 20 20 H 1.08995 * 109.36504 * 28.48511 * 19 9 7 21 21 H 0.97001 * 120.00872 * 174.18961 * 1 2 3 22 22 H 1.08996 * 109.49728 * 338.04639 * 10 9 7 23 23 H 1.09004 * 109.49748 * 98.14037 * 10 9 7 24 24 H 1.08996 * 109.70273 * 65.23968 * 11 10 9 25 25 H 1.09001 * 109.69885 * 185.84413 * 11 10 9 26 26 H 1.09005 * 109.37846 * 186.67197 * 12 11 10 27 27 H 1.08997 * 109.38603 * 306.34452 * 12 11 10 28 28 H 0.97004 * 124.48209 * 181.53507 * 17 15 13 29 29 H 1.08998 * 110.39267 * 258.36437 * 18 17 15 30 30 H 1.09002 * 110.39192 * 135.97754 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 3.5478 1.4401 0.6999 6 1 1.4477 2.6527 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 2.9813 -1.2648 -0.4690 9 7 1.4635 -2.3085 0.5929 10 6 0.4614 -2.0926 1.6286 11 6 0.6513 -3.1276 2.7409 12 6 0.6263 -4.5202 2.1099 13 6 1.8447 -4.7069 1.2059 14 1 2.7638 -4.7603 1.7896 15 6 1.6203 -5.9638 0.3788 16 8 1.8320 -7.0961 0.7579 17 7 1.1404 -5.6258 -0.8422 18 6 1.0340 -4.1659 -0.9840 19 6 1.9171 -3.5979 0.1434 20 1 2.9413 -3.5141 -0.2199 21 1 -0.4851 -0.8357 -0.0850 22 1 0.5749 -1.0902 2.0413 23 1 -0.5347 -2.1990 1.1988 24 1 1.6094 -2.9650 3.2345 25 1 -0.1566 -3.0388 3.4672 26 1 0.6409 -5.2742 2.8969 27 1 -0.2829 -4.6336 1.5194 28 1 0.9017 -6.2626 -1.5340 29 1 0.0001 -3.8460 -0.8541 30 1 1.4107 -3.8503 -1.9569 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299996018.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:08 Heat of formation + Delta-G solvation = -19.872013 kcal Electronic energy + Delta-G solvation = -14576.707881 eV Core-core repulsion = 12179.011624 eV Total energy + Delta-G solvation = -2397.696257 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.28288 -37.31098 -35.05749 -33.37230 -30.79988 -29.76893 -26.40413 -24.87313 -22.71176 -21.99531 -19.94323 -18.71990 -17.47725 -16.89626 -15.43598 -15.07852 -14.34045 -13.90446 -13.79617 -13.44884 -13.15523 -13.03965 -12.65819 -12.35422 -11.79331 -11.07005 -10.93703 -10.70582 -10.46112 -10.18771 -10.11944 -10.01156 -9.54602 -9.24500 -8.70629 -8.39835 -7.09963 -6.21238 -3.35100 2.90550 3.44863 3.49869 3.64981 3.71751 4.45445 4.71869 5.06767 5.19373 5.21505 5.36350 5.53032 5.70531 5.75645 5.88564 6.08771 6.16946 6.28996 6.37763 6.43631 6.49491 6.67193 6.99714 7.09134 7.14127 7.29035 7.94954 8.46353 8.57258 9.03107 9.73811 10.02880 11.06046 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049984 B = 0.010254 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.042588 B = 2729.916934 C = 2959.280855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.014 4.014 3 Si 1.060 2.940 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.375 4.375 8 H 0.061 0.939 9 N -0.577 5.577 10 C 0.160 3.840 11 C -0.136 4.136 12 C -0.095 4.095 13 C -0.128 4.128 14 H 0.103 0.897 15 C 0.525 3.475 16 O -0.549 6.549 17 N -0.735 5.735 18 C 0.074 3.926 19 C 0.189 3.811 20 H 0.068 0.932 21 H 0.270 0.730 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.399 0.601 29 H 0.066 0.934 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -5.313 1.049 5.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.217 4.217 3 Si 0.889 3.111 4 H -0.221 1.221 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.503 4.503 8 H 0.079 0.921 9 N -0.297 5.297 10 C 0.035 3.965 11 C -0.175 4.175 12 C -0.133 4.133 13 C -0.150 4.150 14 H 0.121 0.879 15 C 0.311 3.689 16 O -0.427 6.427 17 N -0.389 5.389 18 C -0.053 4.053 19 C 0.078 3.922 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.236 0.764 29 H 0.085 0.915 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.053 -4.133 1.442 4.502 hybrid contribution -0.027 -1.937 -0.713 2.065 sum 1.026 -6.071 0.729 6.200 Atomic orbital electron populations 1.70792 1.06816 1.30440 1.46378 1.25773 0.96193 1.01410 0.98333 0.83635 0.74995 0.75956 0.76497 1.22135 1.21746 1.21116 1.20048 1.01344 0.89751 1.39200 0.92133 1.43043 1.47049 1.00308 1.39276 1.20768 0.91106 0.97416 0.87186 1.21961 1.01542 0.95118 0.98831 1.21190 0.96137 0.98100 0.97901 1.22256 1.01110 0.93900 0.97751 0.87864 1.21453 0.74924 0.90012 0.82484 1.90666 1.53603 1.23726 1.74701 1.46641 1.66628 1.09517 1.16150 1.23227 1.02228 0.77378 1.02473 1.20256 0.96935 0.85267 0.89778 0.91442 0.91835 0.90830 0.96190 0.91832 0.92029 0.92243 0.92260 0.76351 0.91527 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.28 12.54 55.49 0.70 -24.58 16 2 C -0.01 -0.36 4.42 -17.43 -0.08 -0.44 16 3 Si 1.06 23.83 30.01 -169.99 -5.10 18.73 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.37 -9.63 9.23 -15.06 -0.14 -9.77 16 8 H 0.06 1.57 7.84 -52.49 -0.41 1.16 16 9 N -0.58 -13.13 2.75 -167.00 -0.46 -13.59 16 10 C 0.16 3.49 4.68 -4.40 -0.02 3.47 16 11 C -0.14 -2.39 6.11 -26.72 -0.16 -2.56 16 12 C -0.10 -1.61 5.00 -26.85 -0.13 -1.75 16 13 C -0.13 -2.26 3.34 -90.74 -0.30 -2.57 16 14 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 15 C 0.52 9.52 7.59 -9.96 -0.08 9.45 16 16 O -0.55 -11.42 18.03 5.56 0.10 -11.32 16 17 N -0.73 -11.71 6.31 -58.64 -0.37 -12.08 16 18 C 0.07 1.30 7.40 -3.18 -0.02 1.28 16 19 C 0.19 3.68 3.04 -68.37 -0.21 3.48 16 20 H 0.07 1.35 7.82 -51.93 -0.41 0.94 16 21 H 0.27 7.56 6.46 -40.82 -0.26 7.30 16 22 H 0.07 1.79 6.72 -51.93 -0.35 1.44 16 23 H 0.02 0.46 7.03 -51.93 -0.36 0.10 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 28 H 0.40 5.40 8.96 -40.82 -0.37 5.03 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 243.41 15.07 3.67 3.67 Total: -1.00 -28.85 243.41 -6.52 -35.37 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.91 Total: 3.21 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.14 Total: 0.60 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.13 Total: -50.25 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.10 Total: -11.32 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.10 Total: 18.73 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.85 -6.52 -35.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299996018.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.498 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds