Wall clock time and date at job start Sun Mar 29 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48500 * 109.47073 * 270.00431 * 3 2 1 5 5 H 1.48499 * 109.47044 * 150.00403 * 3 2 1 6 6 H 1.48498 * 109.47171 * 30.00192 * 3 2 1 7 7 C 1.38816 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99689 * 149.94574 * 7 2 1 9 9 N 1.36931 * 119.99636 * 329.94486 * 7 2 1 10 10 C 1.45719 * 117.57148 * 336.46130 * 9 7 2 11 11 C 1.53120 * 109.32339 * 218.09589 * 10 9 7 12 12 C 1.52908 * 108.28686 * 305.53969 * 11 10 9 13 13 C 1.52858 * 110.01389 * 66.50953 * 12 11 10 14 14 H 1.09008 * 111.18881 * 69.00918 * 13 12 11 15 15 C 1.52127 * 107.75145 * 192.12933 * 13 12 11 16 16 O 1.21275 * 125.14920 * 277.91256 * 15 13 12 17 17 N 1.35471 * 109.64352 * 97.53738 * 15 13 12 18 18 C 1.47067 * 111.11091 * 1.78196 * 17 15 13 19 19 C 1.43881 * 117.56362 * 156.20014 * 9 7 2 20 20 H 1.08995 * 109.36504 * 28.48511 * 19 9 7 21 21 H 0.97001 * 120.00872 * 174.18961 * 1 2 3 22 22 H 1.08996 * 109.49728 * 338.04639 * 10 9 7 23 23 H 1.09004 * 109.49748 * 98.14037 * 10 9 7 24 24 H 1.08996 * 109.70273 * 65.23968 * 11 10 9 25 25 H 1.09001 * 109.69885 * 185.84413 * 11 10 9 26 26 H 1.09005 * 109.37846 * 186.67197 * 12 11 10 27 27 H 1.08997 * 109.38603 * 306.34452 * 12 11 10 28 28 H 0.97004 * 124.48209 * 181.53507 * 17 15 13 29 29 H 1.08998 * 110.39267 * 258.36437 * 18 17 15 30 30 H 1.09002 * 110.39192 * 135.97754 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 3.5478 1.4401 0.6999 6 1 1.4477 2.6527 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 2.9813 -1.2648 -0.4690 9 7 1.4635 -2.3085 0.5929 10 6 0.4614 -2.0926 1.6286 11 6 0.6513 -3.1276 2.7409 12 6 0.6263 -4.5202 2.1099 13 6 1.8447 -4.7069 1.2059 14 1 2.7638 -4.7603 1.7896 15 6 1.6203 -5.9638 0.3788 16 8 1.8320 -7.0961 0.7579 17 7 1.1404 -5.6258 -0.8422 18 6 1.0340 -4.1659 -0.9840 19 6 1.9171 -3.5979 0.1434 20 1 2.9413 -3.5141 -0.2199 21 1 -0.4851 -0.8357 -0.0850 22 1 0.5749 -1.0902 2.0413 23 1 -0.5347 -2.1990 1.1988 24 1 1.6094 -2.9650 3.2345 25 1 -0.1566 -3.0388 3.4672 26 1 0.6409 -5.2742 2.8969 27 1 -0.2829 -4.6336 1.5194 28 1 0.9017 -6.2626 -1.5340 29 1 0.0001 -3.8460 -0.8541 30 1 1.4107 -3.8503 -1.9569 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299996018.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:08 Heat of formation + Delta-G solvation = -39.665552 kcal Electronic energy + Delta-G solvation = -14577.566193 eV Core-core repulsion = 12179.011624 eV Total energy + Delta-G solvation = -2398.554569 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.78764 -38.93535 -36.65083 -35.02778 -32.54550 -31.37214 -28.00988 -26.58100 -24.45775 -23.52672 -21.42265 -20.36327 -19.28533 -18.37451 -17.05145 -16.58715 -15.97563 -15.64515 -15.38354 -15.15955 -14.66963 -14.59397 -14.22664 -13.94823 -13.33379 -12.85432 -12.64212 -12.28710 -12.06157 -11.87336 -11.76923 -11.69407 -11.20199 -10.82499 -10.36311 -10.13465 -8.99053 -8.24524 -5.36476 1.44534 1.64120 1.70224 1.88266 2.32900 2.66151 3.12263 3.24032 3.61779 3.66392 3.84780 4.02168 4.19223 4.27384 4.38387 4.61153 4.71338 4.81070 4.88699 4.98341 5.04953 5.13270 5.25885 5.46051 5.72558 5.91399 5.94868 6.43136 7.11626 7.18146 7.82995 8.10882 9.00732 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049984 B = 0.010254 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.042588 B = 2729.916934 C = 2959.280855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.060 4.060 3 Si 1.106 2.894 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.375 4.375 8 H 0.056 0.944 9 N -0.588 5.588 10 C 0.166 3.834 11 C -0.124 4.124 12 C -0.090 4.090 13 C -0.122 4.122 14 H 0.113 0.887 15 C 0.528 3.472 16 O -0.573 6.573 17 N -0.717 5.717 18 C 0.087 3.913 19 C 0.180 3.820 20 H 0.064 0.936 21 H 0.259 0.741 22 H 0.042 0.958 23 H 0.003 0.997 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.414 0.586 29 H 0.055 0.945 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -6.013 1.312 6.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.259 4.259 3 Si 0.931 3.069 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.504 4.504 8 H 0.074 0.926 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.162 4.162 12 C -0.128 4.128 13 C -0.145 4.145 14 H 0.131 0.869 15 C 0.315 3.685 16 O -0.453 6.453 17 N -0.372 5.372 18 C -0.040 4.040 19 C 0.070 3.930 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.021 0.979 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.254 0.746 29 H 0.073 0.927 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.658 -4.870 1.680 5.411 hybrid contribution -0.197 -1.765 -0.823 1.957 sum 1.461 -6.635 0.857 6.848 Atomic orbital electron populations 1.70891 1.07662 1.29746 1.49059 1.26880 0.96273 1.04284 0.98413 0.82997 0.74312 0.72728 0.76838 1.21243 1.20346 1.21827 1.20247 1.00946 0.90877 1.38338 0.92633 1.43155 1.47132 1.00854 1.39736 1.20603 0.90015 0.97207 0.88064 1.21848 1.02665 0.94024 0.97672 1.21162 0.95414 0.98042 0.98204 1.22232 1.02054 0.92713 0.97482 0.86915 1.21412 0.74691 0.89573 0.82834 1.90666 1.54871 1.24533 1.75207 1.46448 1.65715 1.09037 1.16047 1.22911 1.01028 0.78037 1.02028 1.20345 0.96810 0.84690 0.91139 0.91842 0.93094 0.93959 0.97945 0.91444 0.89697 0.90134 0.92771 0.74574 0.92682 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.90 12.54 21.65 0.27 -52.62 16 2 C -0.06 -3.18 4.42 84.86 0.37 -2.81 16 3 Si 1.11 48.07 30.01 68.60 2.06 50.13 16 4 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.37 -19.21 9.23 84.04 0.78 -18.43 16 8 H 0.06 2.86 7.84 -2.91 -0.02 2.84 16 9 N -0.59 -26.58 2.75 -682.27 -1.88 -28.46 16 10 C 0.17 7.23 4.68 86.57 0.41 7.64 16 11 C -0.12 -4.13 6.11 30.60 0.19 -3.95 16 12 C -0.09 -2.84 5.00 30.52 0.15 -2.69 16 13 C -0.12 -4.08 3.34 -10.87 -0.04 -4.11 16 14 H 0.11 3.57 8.14 -2.38 -0.02 3.56 16 15 C 0.53 17.96 7.59 88.01 0.67 18.63 16 16 O -0.57 -22.54 18.03 -3.02 -0.05 -22.59 16 17 N -0.72 -21.30 6.31 -457.44 -2.89 -24.19 16 18 C 0.09 2.95 7.40 86.63 0.64 3.59 16 19 C 0.18 6.81 3.04 46.09 0.14 6.95 16 20 H 0.06 2.45 7.82 -2.39 -0.02 2.43 16 21 H 0.26 14.84 6.46 -92.71 -0.60 14.24 16 22 H 0.04 2.08 6.72 -2.39 -0.02 2.07 16 23 H 0.00 0.13 7.03 -2.38 -0.02 0.11 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 27 H 0.05 1.77 7.97 -2.39 -0.02 1.75 16 28 H 0.41 10.17 8.96 -92.71 -0.83 9.34 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -60.52 243.41 1.30 -59.21 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.48 Total: 13.70 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 3.31 Total: 4.82 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -4.49 Total: -105.27 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.06 Total: 50.13 kcal Total: -60.52 1.30 -59.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299996018.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.549 kcal (2) G-P(sol) polarization free energy of solvation -60.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds