Wall clock time and date at job start Sun Mar 29 2020 21:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 126.12648 * 2 1 4 4 C 1.39876 * 107.91813 * 179.84798 * 3 2 1 5 5 N 1.48023 * 125.89802 * 180.16618 * 4 3 2 6 6 O 1.21798 * 119.99995 * 180.32297 * 5 4 3 7 7 O 1.21801 * 119.99980 * 0.32217 * 5 4 3 8 8 N 1.30834 * 108.20187 * 0.42111 * 4 3 2 9 9 N 1.34949 * 126.12355 * 180.31000 * 2 1 3 10 10 C 1.46493 * 126.03912 * 359.96400 * 9 2 1 11 11 C 1.50697 * 109.47277 * 90.00388 * 10 9 2 12 12 H 1.08008 * 119.99896 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00490 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00435 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99649 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46934 * 90.00352 * 15 13 11 17 17 H 1.48495 * 109.47446 * 210.00563 * 15 13 11 18 18 H 1.48499 * 109.47327 * 330.00474 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.69013 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.69114 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.69095 * 1 2 3 22 22 H 1.07998 * 126.03950 * 359.97406 * 3 2 1 23 23 H 1.09004 * 109.46881 * 210.00090 * 10 9 2 24 24 H 1.09001 * 109.47547 * 329.99927 * 10 9 2 25 25 H 0.96994 * 120.00309 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0035 5 7 4.8326 1.5237 0.0082 6 8 5.9444 1.0263 0.0051 7 8 4.7076 2.7352 0.0152 8 7 3.6334 -0.6525 -0.0036 9 7 2.3026 -1.0900 -0.0059 10 6 1.8539 -2.4845 -0.0127 11 6 1.6994 -2.9556 -1.4358 12 1 1.9136 -2.2832 -2.2535 13 6 1.2835 -4.2446 -1.6941 14 7 1.1482 -4.6555 -2.9360 15 14 0.9123 -5.4072 -0.2799 16 1 -0.5187 -5.2860 0.0979 17 1 1.1972 -6.8031 -0.6988 18 1 1.7633 -5.0567 0.8855 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5186 21 1 -0.3633 0.8928 -0.5090 22 1 1.9740 2.1210 -0.0004 23 1 2.5901 -3.1056 0.4977 24 1 0.8956 -2.5605 0.5012 25 1 0.8560 -5.5624 -3.1177 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300770783.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:31 Heat of formation + Delta-G solvation = 71.640755 kcal Electronic energy + Delta-G solvation = -13488.180937 eV Core-core repulsion = 10893.193966 eV Total energy + Delta-G solvation = -2594.986971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.03167 -41.02994 -36.31079 -34.26997 -32.65268 -31.82244 -28.81032 -27.11233 -26.22048 -22.91384 -21.19760 -20.00835 -18.41310 -17.65142 -17.54208 -17.28305 -16.06257 -15.04783 -14.30709 -13.92596 -13.21842 -12.85181 -12.76164 -12.41602 -12.06366 -11.50672 -11.37843 -11.15143 -11.02678 -10.92346 -10.72494 -10.61065 -10.00322 -9.21811 -9.02480 -8.58766 -6.50075 -4.58196 0.43611 1.20978 1.98212 2.66324 2.93261 2.99067 3.05351 3.12319 3.99919 4.52284 4.75928 4.95247 5.26412 5.41577 5.60214 5.78448 5.99269 6.03456 6.13968 6.22118 6.66438 6.93087 7.05053 7.41387 7.98439 8.02081 8.50541 9.01362 10.61640 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.044012 B = 0.008318 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.044327 B = 3365.184785 C = 3644.495651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.102 3.898 3 C -0.233 4.233 4 C 0.097 3.903 5 N 0.066 4.934 6 O -0.143 6.143 7 O -0.151 6.151 8 N -0.213 5.213 9 N -0.277 5.277 10 C 0.222 3.778 11 C -0.556 4.556 12 H 0.083 0.917 13 C 0.086 3.914 14 N -0.876 5.876 15 Si 0.873 3.127 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.263 1.263 19 H 0.082 0.918 20 H 0.093 0.907 21 H 0.087 0.913 22 H 0.165 0.835 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 6.975 7.191 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 C -0.264 4.264 4 C -0.144 4.144 5 N 0.589 4.411 6 O -0.361 6.361 7 O -0.364 6.364 8 N -0.047 5.047 9 N -0.065 5.065 10 C 0.104 3.896 11 C -0.594 4.594 12 H 0.101 0.899 13 C -0.121 4.121 14 N -0.512 5.512 15 Si 0.698 3.302 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.187 1.187 19 H 0.100 0.900 20 H 0.112 0.888 21 H 0.106 0.894 22 H 0.183 0.817 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.138 5.281 7.051 9.352 hybrid contribution -0.255 0.107 0.464 0.541 sum -3.393 5.388 7.516 9.850 Atomic orbital electron populations 1.20547 0.85850 1.05350 1.03537 1.21247 0.95934 0.85779 0.99761 1.20770 0.88078 1.00792 1.16775 1.22422 0.86210 0.91081 1.14674 1.42249 1.00861 1.00562 0.97451 1.94576 1.10600 1.78416 1.52535 1.94516 1.93044 0.95134 1.53743 1.77370 1.00218 1.08188 1.18922 1.49339 1.00520 1.08609 1.48013 1.20434 0.96232 0.71983 1.00913 1.21021 1.49355 0.99559 0.89497 0.89851 1.24769 0.94022 0.97292 0.95994 1.69842 1.44181 1.18578 1.18563 0.86900 0.79539 0.81307 0.82447 1.19321 1.20077 1.18712 0.89990 0.88848 0.89387 0.81705 0.92071 0.92291 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.90 36.01 0.36 -0.82 15 2 C 0.10 1.74 6.93 -82.26 -0.57 1.17 15 3 C -0.23 -3.91 10.43 -40.01 -0.42 -4.33 15 4 C 0.10 1.93 8.15 -146.41 -1.19 0.74 15 5 N 0.07 1.28 4.45 33.02 0.15 1.43 15 6 O -0.14 -2.89 19.23 -29.46 -0.57 -3.46 15 7 O -0.15 -2.73 19.04 -29.46 -0.56 -3.29 15 8 N -0.21 -4.68 12.54 33.02 0.41 -4.27 15 9 N -0.28 -5.70 3.60 -58.32 -0.21 -5.91 15 10 C 0.22 4.73 4.89 -5.20 -0.03 4.70 15 11 C -0.56 -14.27 9.94 -34.44 -0.34 -14.62 15 12 H 0.08 2.44 8.06 -52.48 -0.42 2.02 15 13 C 0.09 2.21 5.47 -17.82 -0.10 2.11 15 14 N -0.88 -24.49 13.96 55.43 0.77 -23.72 15 15 Si 0.87 18.46 27.47 -169.99 -4.67 13.79 15 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 18 H -0.26 -5.28 6.54 56.52 0.37 -4.91 15 19 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.09 1.29 7.72 -51.93 -0.40 0.89 15 21 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.17 2.22 8.06 -52.49 -0.42 1.80 15 23 H 0.06 1.32 7.20 -51.93 -0.37 0.95 15 24 H 0.06 1.10 7.09 -51.93 -0.37 0.73 15 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 239.47 15.07 3.61 3.61 Total: -1.00 -28.97 239.47 -5.35 -34.32 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -2.00 Total: -1.47 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.29 Total: -11.04 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 1.13 Total: -32.46 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -1.13 Total: -6.75 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.67 Total: 13.79 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.97 -5.35 -34.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300770783.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.966 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds