Wall clock time and date at job start Sun Mar 29 2020 21:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48499 * 109.47028 * 269.99479 * 3 2 1 5 5 H 1.48497 * 109.46974 * 29.99891 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.99650 * 3 2 1 7 7 C 1.38666 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00464 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.76195 * 100.00248 * 179.97438 * 9 7 2 11 11 N 1.31397 * 126.49020 * 359.97161 * 10 9 7 12 12 N 1.28534 * 109.79774 * 180.02562 * 11 10 9 13 13 C 1.30493 * 110.05998 * 0.02562 * 12 11 10 14 14 C 1.50697 * 126.32050 * 179.97438 * 13 12 11 15 15 C 1.52997 * 117.50456 * 163.76828 * 14 13 12 16 16 C 1.52995 * 117.50369 * 95.10237 * 14 13 12 17 17 N 1.36482 * 107.36634 * 359.97438 * 13 12 11 18 18 H 0.97002 * 127.12265 * 179.97438 * 17 13 12 19 19 H 0.97005 * 120.00317 * 0.02562 * 1 2 3 20 20 H 1.09009 * 115.54445 * 309.43473 * 14 13 12 21 21 H 1.08999 * 117.49968 * 359.97438 * 15 14 13 22 22 H 1.08997 * 117.49945 * 145.01465 * 15 14 13 23 23 H 1.09002 * 117.50282 * 214.98569 * 16 14 13 24 24 H 1.08997 * 117.49933 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0097 -1.2009 0.0005 8 1 3.0897 -1.2010 0.0010 9 16 1.1287 -2.7268 0.0005 10 6 2.4784 -3.8594 0.0005 11 7 3.7560 -3.5525 0.0000 12 7 4.4618 -4.6267 -0.0003 13 6 3.6832 -5.6739 -0.0006 14 6 4.1249 -7.1146 -0.0016 15 6 3.0865 -8.1723 0.3775 16 6 4.2172 -7.8263 1.3496 17 7 2.3948 -5.2235 0.0002 18 1 1.5869 -5.7605 -0.0002 19 1 -0.4851 0.8401 -0.0004 20 1 4.8597 -7.3805 -0.7617 21 1 2.0838 -7.8261 0.6281 22 1 3.1383 -9.1341 -0.1328 23 1 5.0124 -8.5606 1.4785 24 1 3.9588 -7.2523 2.2394 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175561.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:42 Heat of formation + Delta-G solvation = 65.620590 kcal Electronic energy + Delta-G solvation = -11185.931927 eV Core-core repulsion = 9033.436774 eV Total energy + Delta-G solvation = -2152.495154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.71022 -38.12364 -34.80447 -34.39867 -31.41168 -27.82344 -25.25804 -23.80372 -23.00943 -21.81724 -20.34719 -18.84553 -17.27261 -16.97916 -16.88769 -16.40563 -15.42191 -14.92322 -13.55813 -13.39930 -13.00150 -12.94327 -12.48937 -12.42712 -12.13051 -11.96914 -11.85513 -11.79389 -11.34967 -11.29435 -10.81377 -10.52013 -8.72138 -8.52965 -6.31510 0.70592 0.75184 1.37494 1.40214 1.53239 1.83042 2.05706 2.18099 2.78169 2.87902 3.05007 3.41950 3.79966 3.97454 4.20907 4.39723 4.62377 4.73237 4.92202 5.04856 5.08654 5.20212 5.46445 6.20944 6.22351 6.95008 7.76952 8.56474 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.074021 B = 0.007343 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.180063 B = 3812.431301 C = 4105.254188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.032 3.968 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.559 4.559 8 H 0.085 0.915 9 S 0.118 5.882 10 C 0.158 3.842 11 N -0.348 5.348 12 N -0.333 5.333 13 C 0.205 3.795 14 C -0.093 4.093 15 C -0.150 4.150 16 C -0.152 4.152 17 N -0.567 5.567 18 H 0.440 0.560 19 H 0.281 0.719 20 H 0.148 0.852 21 H 0.094 0.906 22 H 0.139 0.861 23 H 0.133 0.867 24 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -14.643 0.737 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.175 4.175 3 Si 0.817 3.183 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.707 4.707 8 H 0.103 0.897 9 S 0.348 5.652 10 C -0.218 4.218 11 N -0.192 5.192 12 N -0.173 5.173 13 C -0.068 4.068 14 C -0.113 4.113 15 C -0.187 4.187 16 C -0.191 4.191 17 N -0.187 5.187 18 H 0.283 0.717 19 H 0.090 0.910 20 H 0.165 0.835 21 H 0.113 0.887 22 H 0.157 0.843 23 H 0.151 0.849 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.239 -13.750 0.733 13.950 hybrid contribution 0.143 0.469 -0.031 0.492 sum 2.382 -13.280 0.703 13.511 Atomic orbital electron populations 1.69998 1.07127 1.29652 1.47173 1.25930 0.96104 1.02688 0.92761 0.84985 0.78080 0.76093 0.79095 1.19021 1.18887 1.19657 1.23296 0.96621 0.91044 1.59783 0.89700 1.83114 0.98195 0.95222 1.88659 1.27993 1.01402 0.87342 1.05053 1.74664 1.00302 1.20800 1.23482 1.73811 1.28318 0.95088 1.20055 1.24658 0.80329 0.98005 1.03804 1.20355 1.05859 0.81579 1.03548 1.23237 0.94250 0.99237 1.02015 1.23153 1.02396 1.01959 0.91551 1.43980 1.10067 1.05252 1.59385 0.71731 0.90965 0.83468 0.88710 0.84335 0.84879 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.98 13.22 21.62 0.29 -50.69 14 2 C 0.03 1.75 5.49 84.83 0.47 2.22 14 3 Si 1.00 44.23 29.55 68.60 2.03 46.26 14 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 14 5 H -0.26 -10.93 7.11 99.48 0.71 -10.22 14 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 14 7 C -0.56 -32.48 9.37 67.92 0.64 -31.84 14 8 H 0.08 5.18 6.93 -2.91 -0.02 5.16 14 9 S 0.12 6.02 21.89 -56.49 -1.24 4.78 14 10 C 0.16 7.45 8.36 179.48 1.50 8.95 14 11 N -0.35 -18.22 11.04 -56.72 -0.63 -18.84 14 12 N -0.33 -15.27 12.18 -49.59 -0.60 -15.87 14 13 C 0.20 7.21 7.80 137.66 1.07 8.28 14 14 C -0.09 -2.07 6.33 -11.54 -0.07 -2.15 14 15 C -0.15 -2.14 10.15 30.62 0.31 -1.83 14 16 C -0.15 -2.62 10.24 30.62 0.31 -2.31 14 17 N -0.57 -20.17 6.16 -185.23 -1.14 -21.31 14 18 H 0.44 11.75 8.29 -92.71 -0.77 10.98 14 19 H 0.28 14.61 8.31 -92.70 -0.77 13.84 14 20 H 0.15 2.85 8.14 -2.38 -0.02 2.83 14 21 H 0.09 1.35 7.44 -2.39 -0.02 1.33 14 22 H 0.14 1.17 8.14 -2.39 -0.02 1.15 14 23 H 0.13 1.57 8.14 -2.39 -0.02 1.55 14 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 14 Total: -1.00 -71.64 236.64 3.40 -68.24 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.47 Total: 6.12 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.23 Total: -18.69 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -2.08 Total: -106.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -1.24 Total: 4.78 kcal Total: -71.64 3.40 -68.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175561.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.862 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds