Wall clock time and date at job start Sun Mar 29 2020 21:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39890 * 125.74195 * 2 1 4 4 C 1.30283 * 109.25872 * 180.02562 * 3 2 1 5 5 C 1.41504 * 108.19134 * 359.97438 * 4 3 2 6 6 C 1.46704 * 126.52748 * 179.97438 * 5 4 3 7 7 O 1.21711 * 119.99912 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00004 * 0.02562 * 6 5 4 9 9 C 1.37013 * 120.00158 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99721 * 359.97438 * 9 8 6 11 11 C 1.38940 * 120.00129 * 180.02562 * 9 8 6 12 12 N 1.31444 * 119.99880 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00024 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46865 * 89.99653 * 13 11 9 15 15 H 1.48499 * 109.47167 * 209.99601 * 13 11 9 16 16 H 1.48502 * 109.47134 * 330.00175 * 13 11 9 17 17 C 1.34862 * 125.74836 * 180.02562 * 2 1 3 18 18 N 1.37988 * 126.45344 * 0.23528 * 17 2 1 19 19 H 1.08999 * 109.47346 * 269.96020 * 1 2 3 20 20 H 1.09000 * 109.47721 * 29.96361 * 1 2 3 21 21 H 1.09004 * 109.46749 * 149.96220 * 1 2 3 22 22 H 1.07994 * 125.90652 * 180.02562 * 4 3 2 23 23 H 0.96995 * 119.99859 * 0.02562 * 8 6 5 24 24 H 0.96999 * 119.99936 * 180.02562 * 12 11 9 25 25 H 0.97003 * 119.99825 * 179.68291 * 18 17 2 26 26 H 0.96996 * 120.00171 * 359.68012 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2821 1.1354 0.0000 4 6 3.5314 0.7658 -0.0006 5 6 3.5735 -0.6486 -0.0003 6 6 4.7779 -1.4863 -0.0013 7 8 4.6756 -2.6991 -0.0015 8 7 5.9976 -0.9129 -0.0020 9 6 7.1224 -1.6952 -0.0035 10 1 7.0317 -2.7713 -0.0036 11 6 8.3798 -1.1040 -0.0037 12 7 8.4902 0.2058 -0.0030 13 14 9.9133 -2.1706 -0.0049 14 1 10.3190 -2.4525 -1.4054 15 1 11.0123 -1.4582 0.6949 16 1 9.6277 -3.4491 0.6945 17 6 2.2528 -1.0945 -0.0005 18 7 1.8311 -2.4084 -0.0056 19 1 -0.3634 -0.0007 1.0276 20 1 -0.3634 0.8903 -0.5132 21 1 -0.3633 -0.8897 -0.5145 22 1 4.3869 1.4248 -0.0003 23 1 6.0791 0.0536 -0.0015 24 1 9.3680 0.6185 -0.0035 25 1 2.4827 -3.1269 -0.0102 26 1 0.8830 -2.6134 -0.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306179784.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:26 Heat of formation + Delta-G solvation = 36.502834 kcal Electronic energy + Delta-G solvation = -13426.042233 eV Core-core repulsion = 10927.250230 eV Total energy + Delta-G solvation = -2498.792003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.72938 -37.57038 -34.58886 -33.67951 -32.62252 -31.03064 -28.16107 -26.82718 -24.63612 -21.75150 -20.37249 -19.08499 -17.87868 -17.20524 -15.95008 -15.48977 -15.36815 -14.49049 -13.99972 -13.83060 -13.28969 -12.92680 -12.57251 -12.38520 -12.33186 -11.43990 -11.02509 -10.81130 -10.33949 -10.30687 -10.10233 -9.43740 -8.57294 -8.35267 -7.86490 -7.26252 -6.32043 -3.68871 2.39556 2.63288 2.92893 3.29639 3.32391 3.38424 4.07796 4.26829 4.59999 4.66441 5.14003 5.25709 5.36570 5.50871 5.61138 5.80422 6.02541 6.65471 6.74651 7.11322 7.64032 7.73972 7.84769 8.17244 8.32927 8.75109 9.28447 9.70560 10.22954 10.86377 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.064647 B = 0.007709 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.016954 B = 3631.415958 C = 4049.288649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.409 5.409 3 N -0.323 5.323 4 C 0.106 3.894 5 C -0.334 4.334 6 C 0.529 3.471 7 O -0.618 6.618 8 N -0.557 5.557 9 C -0.293 4.293 10 H 0.103 0.897 11 C 0.020 3.980 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.408 3.592 18 N -0.835 5.835 19 H 0.068 0.932 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.187 0.813 23 H 0.393 0.607 24 H 0.271 0.729 25 H 0.432 0.568 26 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 0.045 -0.065 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.199 5.199 3 N -0.143 5.143 4 C -0.083 4.083 5 C -0.354 4.354 6 C 0.317 3.683 7 O -0.507 6.507 8 N -0.191 5.191 9 C -0.423 4.423 10 H 0.121 0.879 11 C -0.182 4.182 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.195 1.195 17 C 0.176 3.824 18 N -0.386 5.386 19 H 0.086 0.914 20 H 0.107 0.893 21 H 0.094 0.906 22 H 0.204 0.796 23 H 0.226 0.774 24 H 0.081 0.919 25 H 0.269 0.731 26 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.501 0.407 -0.058 13.507 hybrid contribution 1.155 -0.870 -0.004 1.446 sum -12.346 -0.462 -0.062 12.354 Atomic orbital electron populations 1.21644 0.75293 1.03837 1.02693 1.48056 1.05814 1.02731 1.63255 1.77008 1.01982 1.05247 1.30107 1.23852 0.94839 0.94218 0.95347 1.19768 0.91689 0.93429 1.30465 1.16607 0.82155 0.86686 0.82855 1.90478 1.86706 1.14343 1.59142 1.41589 1.03989 1.09395 1.64109 1.19705 0.83110 0.92572 1.46954 0.87925 1.25249 0.99215 0.96032 0.97660 1.69627 1.25171 1.08721 1.50764 0.85865 0.80589 0.79571 0.78277 1.20519 1.21010 1.19512 1.18062 0.89602 0.81634 0.93135 1.41680 1.10391 1.02988 1.83584 0.91394 0.89285 0.90618 0.79611 0.77365 0.91946 0.73130 0.78201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.06 11.25 59.84 0.67 1.74 15 2 N -0.41 -6.49 4.00 -66.80 -0.27 -6.75 15 3 N -0.32 -5.84 12.47 30.88 0.38 -5.46 15 4 C 0.11 2.02 11.49 -16.96 -0.19 1.82 15 5 C -0.33 -7.10 6.15 -104.80 -0.64 -7.75 15 6 C 0.53 13.41 7.74 -12.84 -0.10 13.31 15 7 O -0.62 -16.85 14.72 5.18 0.08 -16.77 15 8 N -0.56 -14.80 5.27 -12.15 -0.06 -14.87 15 9 C -0.29 -8.37 9.68 -14.98 -0.14 -8.52 15 10 H 0.10 3.03 7.15 -52.49 -0.38 2.66 15 11 C 0.02 0.54 5.50 -17.46 -0.10 0.44 15 12 N -0.90 -24.98 13.05 55.50 0.72 -24.26 15 13 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 15 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 17 C 0.41 7.31 7.99 -153.75 -1.23 6.08 15 18 N -0.84 -12.24 9.02 31.42 0.28 -11.96 15 19 H 0.07 0.58 8.14 -51.93 -0.42 0.15 15 20 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.08 0.55 7.46 -51.93 -0.39 0.17 15 22 H 0.19 3.20 7.49 -52.49 -0.39 2.81 15 23 H 0.39 10.00 6.84 -40.82 -0.28 9.72 15 24 H 0.27 7.08 8.31 -40.82 -0.34 6.75 15 25 H 0.43 7.18 7.02 -40.82 -0.29 6.89 15 26 H 0.39 3.98 8.04 -40.82 -0.33 3.65 15 LS Contribution 237.79 15.07 3.58 3.58 Total: -1.00 -33.51 237.79 -4.07 -37.58 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -2.03 Total: 15.44 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.73 Total: 7.13 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 1.06 Total: -63.30 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.08 Total: -16.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.51 -4.07 -37.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179784.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.082 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds