Wall clock time and date at job start Sun Mar 29 2020 21:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39890 * 125.74195 * 2 1 4 4 C 1.30283 * 109.25872 * 180.02562 * 3 2 1 5 5 C 1.41504 * 108.19134 * 359.97438 * 4 3 2 6 6 C 1.46704 * 126.52748 * 179.97438 * 5 4 3 7 7 O 1.21711 * 119.99912 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00004 * 0.02562 * 6 5 4 9 9 C 1.37013 * 120.00158 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99721 * 359.97438 * 9 8 6 11 11 C 1.38940 * 120.00129 * 180.02562 * 9 8 6 12 12 N 1.31444 * 119.99880 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00024 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46865 * 89.99653 * 13 11 9 15 15 H 1.48499 * 109.47167 * 209.99601 * 13 11 9 16 16 H 1.48502 * 109.47134 * 330.00175 * 13 11 9 17 17 C 1.34862 * 125.74836 * 180.02562 * 2 1 3 18 18 N 1.37988 * 126.45344 * 0.23528 * 17 2 1 19 19 H 1.08999 * 109.47346 * 269.96020 * 1 2 3 20 20 H 1.09000 * 109.47721 * 29.96361 * 1 2 3 21 21 H 1.09004 * 109.46749 * 149.96220 * 1 2 3 22 22 H 1.07994 * 125.90652 * 180.02562 * 4 3 2 23 23 H 0.96995 * 119.99859 * 0.02562 * 8 6 5 24 24 H 0.96999 * 119.99936 * 180.02562 * 12 11 9 25 25 H 0.97003 * 119.99825 * 179.68291 * 18 17 2 26 26 H 0.96996 * 120.00171 * 359.68012 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2821 1.1354 0.0000 4 6 3.5314 0.7658 -0.0006 5 6 3.5735 -0.6486 -0.0003 6 6 4.7779 -1.4863 -0.0013 7 8 4.6756 -2.6991 -0.0015 8 7 5.9976 -0.9129 -0.0020 9 6 7.1224 -1.6952 -0.0035 10 1 7.0317 -2.7713 -0.0036 11 6 8.3798 -1.1040 -0.0037 12 7 8.4902 0.2058 -0.0030 13 14 9.9133 -2.1706 -0.0049 14 1 10.3190 -2.4525 -1.4054 15 1 11.0123 -1.4582 0.6949 16 1 9.6277 -3.4491 0.6945 17 6 2.2528 -1.0945 -0.0005 18 7 1.8311 -2.4084 -0.0056 19 1 -0.3634 -0.0007 1.0276 20 1 -0.3634 0.8903 -0.5132 21 1 -0.3633 -0.8897 -0.5145 22 1 4.3869 1.4248 -0.0003 23 1 6.0791 0.0536 -0.0015 24 1 9.3680 0.6185 -0.0035 25 1 2.4827 -3.1269 -0.0102 26 1 0.8830 -2.6134 -0.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306179784.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:26 Heat of formation + Delta-G solvation = 10.421767 kcal Electronic energy + Delta-G solvation = -13427.173193 eV Core-core repulsion = 10927.250230 eV Total energy + Delta-G solvation = -2499.922963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.14053 -39.51939 -36.13323 -35.51428 -33.88134 -33.05305 -29.68560 -28.04950 -26.52380 -23.37319 -21.75049 -20.80420 -19.81885 -18.64055 -17.59097 -16.94115 -16.60847 -16.42048 -15.71272 -15.39144 -15.05044 -14.39936 -14.14254 -13.54517 -13.47320 -13.37861 -12.87600 -12.33340 -12.13838 -12.08426 -11.76236 -11.45256 -10.33619 -9.96409 -9.84888 -8.73515 -8.39148 -5.84270 0.97190 1.30965 1.41134 1.45831 1.53052 1.59246 2.36484 2.68826 2.89781 3.38751 3.44453 3.80712 4.17877 4.42584 4.44226 4.60213 4.70040 4.90460 5.44902 5.51422 5.68746 6.10131 6.34367 6.62646 6.70113 7.00111 7.19665 7.68366 8.22451 8.79452 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.064647 B = 0.007709 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.016954 B = 3631.415958 C = 4049.288649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.399 5.399 3 N -0.326 5.326 4 C 0.104 3.896 5 C -0.381 4.381 6 C 0.527 3.473 7 O -0.645 6.645 8 N -0.570 5.570 9 C -0.329 4.329 10 H 0.083 0.917 11 C -0.017 4.017 12 N -0.923 5.923 13 Si 0.996 3.004 14 H -0.272 1.272 15 H -0.272 1.272 16 H -0.271 1.271 17 C 0.420 3.580 18 N -0.817 5.817 19 H 0.088 0.912 20 H 0.102 0.898 21 H 0.107 0.893 22 H 0.194 0.806 23 H 0.395 0.605 24 H 0.276 0.724 25 H 0.425 0.575 26 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 -0.013 -0.088 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.189 5.189 3 N -0.146 5.146 4 C -0.084 4.084 5 C -0.400 4.400 6 C 0.318 3.682 7 O -0.536 6.536 8 N -0.204 5.204 9 C -0.458 4.458 10 H 0.101 0.899 11 C -0.217 4.217 12 N -0.564 5.564 13 Si 0.819 3.181 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.196 1.196 17 C 0.183 3.817 18 N -0.369 5.369 19 H 0.107 0.893 20 H 0.121 0.879 21 H 0.125 0.875 22 H 0.211 0.789 23 H 0.228 0.772 24 H 0.086 0.914 25 H 0.260 0.740 26 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.865 0.368 -0.082 14.870 hybrid contribution 1.340 -0.859 0.004 1.591 sum -13.525 -0.491 -0.078 13.534 Atomic orbital electron populations 1.22202 0.71549 1.06166 1.04802 1.48409 1.07581 1.01223 1.61674 1.76942 1.01637 1.06410 1.29637 1.23930 0.95651 0.93508 0.95358 1.19549 0.91585 0.94177 1.34720 1.17223 0.82970 0.86853 0.81149 1.90433 1.87363 1.15682 1.60117 1.41614 1.04181 1.09309 1.65319 1.19717 0.84649 0.92067 1.49387 0.89941 1.26071 1.01597 0.97401 0.96591 1.69703 1.26187 1.09859 1.50679 0.84889 0.76825 0.77792 0.78562 1.19704 1.19709 1.19596 1.18031 0.89091 0.83088 0.91447 1.41627 1.11765 1.01505 1.81997 0.89348 0.87913 0.87502 0.78941 0.77154 0.91414 0.73953 0.75378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 11.25 127.77 1.44 2.90 15 2 N -0.40 -11.62 4.00 -365.25 -1.46 -13.08 15 3 N -0.33 -11.29 12.47 -56.22 -0.70 -11.99 15 4 C 0.10 3.96 11.49 85.73 0.99 4.95 15 5 C -0.38 -16.21 6.15 -19.98 -0.12 -16.34 15 6 C 0.53 27.45 7.74 86.45 0.67 28.12 15 7 O -0.65 -36.07 14.72 -4.39 -0.06 -36.13 15 8 N -0.57 -31.29 5.27 -310.57 -1.64 -32.93 15 9 C -0.33 -19.29 9.68 84.05 0.81 -18.48 15 10 H 0.08 5.07 7.15 -2.91 -0.02 5.04 15 11 C -0.02 -0.96 5.50 84.92 0.47 -0.49 15 12 N -0.92 -51.48 13.05 21.66 0.28 -51.20 15 13 Si 1.00 43.89 29.55 68.60 2.03 45.91 15 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 17 C 0.42 14.35 7.99 132.72 1.06 15.41 15 18 N -0.82 -22.26 9.02 -54.52 -0.49 -22.75 15 19 H 0.09 1.12 8.14 -2.39 -0.02 1.10 15 20 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.11 1.05 7.46 -2.38 -0.02 1.03 15 22 H 0.19 6.75 7.49 -2.91 -0.02 6.73 15 23 H 0.39 20.81 6.84 -92.71 -0.63 20.17 15 24 H 0.28 14.39 8.31 -92.71 -0.77 13.62 15 25 H 0.43 13.68 7.02 -92.71 -0.65 13.03 15 26 H 0.41 7.05 8.04 -92.71 -0.75 6.30 15 Total: -1.00 -72.90 237.79 2.49 -70.41 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.78 Total: 35.68 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.31 Total: 16.07 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -4.01 Total: -131.94 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.06 Total: -36.13 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.90 2.49 -70.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179784.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.833 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds