Wall clock time and date at job start Sun Mar 29 2020 21:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47461 * 2 1 4 4 N 1.39142 * 124.43961 * 269.97694 * 3 2 1 5 5 C 1.27573 * 113.16842 * 180.02562 * 4 3 2 6 6 C 1.50693 * 126.42099 * 180.02562 * 5 4 3 7 7 C 1.51441 * 107.16144 * 0.02562 * 5 4 3 8 8 H 1.08996 * 110.74382 * 118.57551 * 7 5 4 9 9 C 1.52998 * 110.60562 * 241.48280 * 7 5 4 10 10 C 1.50706 * 109.47348 * 180.58117 * 9 7 5 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.34956 * 124.43782 * 89.99621 * 3 2 1 19 19 O 1.21296 * 127.49868 * 359.96561 * 18 3 2 20 20 H 1.09001 * 109.46572 * 60.00116 * 1 2 3 21 21 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47153 * 299.99951 * 1 2 3 23 23 H 1.09009 * 109.47227 * 239.99921 * 2 1 3 24 24 H 1.08999 * 109.46943 * 120.00557 * 2 1 3 25 25 H 1.08996 * 109.47556 * 269.95127 * 6 5 4 26 26 H 1.09006 * 109.46892 * 29.94963 * 6 5 4 27 27 H 1.09001 * 109.46928 * 149.94686 * 6 5 4 28 28 H 1.09001 * 109.47671 * 60.58326 * 9 7 5 29 29 H 1.09006 * 109.47297 * 300.58045 * 9 7 5 30 30 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 7 2.2812 2.1229 -1.1475 5 6 2.6988 3.3023 -0.8982 6 6 3.0703 4.3530 -1.9125 7 6 2.7510 3.4487 0.6082 8 1 3.7700 3.6445 0.9420 9 6 1.8103 4.5617 1.0740 10 6 1.8929 4.6949 2.5729 11 1 2.5503 4.0498 3.1369 12 6 1.1292 5.6401 3.2242 13 7 0.3282 6.4253 2.5375 14 14 1.2312 5.8046 5.0821 15 1 0.3191 6.8858 5.5341 16 1 0.8315 4.5222 5.7153 17 1 2.6245 6.1371 5.4739 18 6 2.2728 2.1007 1.1130 19 8 2.1468 1.7464 2.2662 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 4.1288 4.2640 -2.1568 26 1 2.4760 4.2125 -2.8155 27 1 2.8747 5.3424 -1.4991 28 1 0.7876 4.3171 0.7869 29 1 2.1029 5.5032 0.6090 30 1 0.2751 6.3396 1.5727 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306183809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:20 Heat of formation + Delta-G solvation = 2.511407 kcal Electronic energy + Delta-G solvation = -14040.004075 eV Core-core repulsion = 11643.278436 eV Total energy + Delta-G solvation = -2396.725639 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.75138 -36.80409 -34.84015 -33.30332 -30.81615 -30.22646 -27.50914 -25.54071 -23.22759 -22.10335 -20.24549 -18.94570 -16.77903 -16.37741 -15.53193 -14.94047 -14.14588 -13.69837 -13.60659 -13.36091 -13.33136 -12.76384 -12.32633 -12.15869 -11.97577 -11.84472 -11.46545 -11.18710 -11.02696 -10.69689 -10.31651 -10.10753 -9.84149 -9.12853 -8.49757 -8.31633 -8.14183 -6.35444 -4.04323 2.11528 2.83135 3.22240 3.48230 3.52701 3.70235 4.41449 4.55094 4.72215 5.17198 5.31052 5.37237 5.44016 5.47458 5.65605 5.70955 5.83051 5.84372 5.98670 6.07695 6.27605 6.31400 6.60519 6.85050 7.08708 7.20230 8.09451 8.17422 8.48494 8.55974 8.88286 9.65157 11.04894 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.010457 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.347105 B = 2676.972783 C = 3195.765826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.484 5.484 4 N -0.256 5.256 5 C 0.095 3.905 6 C -0.074 4.074 7 C -0.126 4.126 8 H 0.121 0.879 9 C 0.042 3.958 10 C -0.595 4.595 11 H 0.060 0.940 12 C 0.017 3.983 13 N -0.914 5.914 14 Si 1.069 2.931 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.287 1.287 18 C 0.510 3.490 19 O -0.484 6.484 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.009 0.991 29 H 0.028 0.972 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 -7.456 -8.526 12.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.306 5.306 4 N -0.063 5.063 5 C -0.098 4.098 6 C -0.133 4.133 7 C -0.150 4.150 8 H 0.139 0.861 9 C 0.004 3.996 10 C -0.633 4.633 11 H 0.078 0.922 12 C -0.186 4.186 13 N -0.550 5.550 14 Si 0.897 3.103 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.213 1.213 18 C 0.298 3.702 19 O -0.353 6.353 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.264 -7.687 -7.192 11.022 hybrid contribution 0.660 -0.576 -0.696 1.119 sum 3.924 -8.263 -7.889 12.079 Atomic orbital electron populations 1.22181 0.95601 1.02060 1.02988 1.21279 0.94488 0.79375 1.02946 1.49863 1.64243 1.13424 1.03109 1.74452 1.14209 1.06201 1.11422 1.25446 0.95070 0.93000 0.96276 1.20302 1.02042 0.95376 0.95569 1.21887 1.04611 0.97071 0.91409 0.86141 1.18988 0.92198 0.90297 0.98085 1.22021 1.28663 1.21552 0.91098 0.92207 1.25819 0.92944 0.92857 1.06982 1.70819 1.36588 1.38510 1.09118 0.83534 0.76193 0.76229 0.74299 1.20859 1.21353 1.21343 1.21343 0.76837 0.86994 0.85034 1.90707 1.51508 1.75584 1.17532 0.92169 0.91381 0.92044 0.89974 0.89748 0.89861 0.90378 0.89246 0.97264 0.95422 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.14 2.14 6.96 -4.04 -0.03 2.11 16 3 N -0.48 -9.30 3.54 -59.88 -0.21 -9.52 16 4 N -0.26 -4.61 12.02 35.53 0.43 -4.18 16 5 C 0.10 1.64 6.93 -78.73 -0.55 1.09 16 6 C -0.07 -0.92 10.49 36.00 0.38 -0.54 16 7 C -0.13 -2.68 3.02 -92.08 -0.28 -2.95 16 8 H 0.12 2.45 8.14 -51.93 -0.42 2.02 16 9 C 0.04 1.07 3.81 -27.88 -0.11 0.96 16 10 C -0.60 -17.25 8.36 -34.44 -0.29 -17.54 16 11 H 0.06 1.79 7.05 -52.48 -0.37 1.42 16 12 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 13 N -0.91 -28.03 13.65 55.43 0.76 -27.28 16 14 Si 1.07 26.36 29.90 -169.99 -5.08 21.28 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.51 11.61 7.56 -10.43 -0.08 11.53 16 19 O -0.48 -12.55 16.61 5.54 0.09 -12.46 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 24 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.11 7.57 -51.93 -0.39 0.72 16 28 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 29 H 0.03 0.68 7.45 -51.93 -0.39 0.29 16 30 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 LS Contribution 262.20 15.07 3.95 3.95 Total: -1.00 -34.07 262.20 -4.76 -38.84 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -4.03 Total: -3.66 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.66 Total: -6.98 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.97 Total: -40.97 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.07 -4.76 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.348 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds