Wall clock time and date at job start Sun Mar 29 2020 21:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47461 * 2 1 4 4 N 1.39142 * 124.43961 * 269.97694 * 3 2 1 5 5 C 1.27573 * 113.16842 * 180.02562 * 4 3 2 6 6 C 1.50693 * 126.42099 * 180.02562 * 5 4 3 7 7 C 1.51441 * 107.16144 * 0.02562 * 5 4 3 8 8 H 1.08996 * 110.74382 * 118.57551 * 7 5 4 9 9 C 1.52998 * 110.60562 * 241.48280 * 7 5 4 10 10 C 1.50706 * 109.47348 * 180.58117 * 9 7 5 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.34956 * 124.43782 * 89.99621 * 3 2 1 19 19 O 1.21296 * 127.49868 * 359.96561 * 18 3 2 20 20 H 1.09001 * 109.46572 * 60.00116 * 1 2 3 21 21 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47153 * 299.99951 * 1 2 3 23 23 H 1.09009 * 109.47227 * 239.99921 * 2 1 3 24 24 H 1.08999 * 109.46943 * 120.00557 * 2 1 3 25 25 H 1.08996 * 109.47556 * 269.95127 * 6 5 4 26 26 H 1.09006 * 109.46892 * 29.94963 * 6 5 4 27 27 H 1.09001 * 109.46928 * 149.94686 * 6 5 4 28 28 H 1.09001 * 109.47671 * 60.58326 * 9 7 5 29 29 H 1.09006 * 109.47297 * 300.58045 * 9 7 5 30 30 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 7 2.2812 2.1229 -1.1475 5 6 2.6988 3.3023 -0.8982 6 6 3.0703 4.3530 -1.9125 7 6 2.7510 3.4487 0.6082 8 1 3.7700 3.6445 0.9420 9 6 1.8103 4.5617 1.0740 10 6 1.8929 4.6949 2.5729 11 1 2.5503 4.0498 3.1369 12 6 1.1292 5.6401 3.2242 13 7 0.3282 6.4253 2.5375 14 14 1.2312 5.8046 5.0821 15 1 0.3191 6.8858 5.5341 16 1 0.8315 4.5222 5.7153 17 1 2.6245 6.1371 5.4739 18 6 2.2728 2.1007 1.1130 19 8 2.1468 1.7464 2.2662 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 4.1288 4.2640 -2.1568 26 1 2.4760 4.2125 -2.8155 27 1 2.8747 5.3424 -1.4991 28 1 0.7876 4.3171 0.7869 29 1 2.1029 5.5032 0.6090 30 1 0.2751 6.3396 1.5727 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:20 Heat of formation + Delta-G solvation = -20.878796 kcal Electronic energy + Delta-G solvation = -14041.018351 eV Core-core repulsion = 11643.278436 eV Total energy + Delta-G solvation = -2397.739914 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.34235 -38.53660 -36.48984 -35.20567 -32.30249 -31.87185 -28.79313 -27.47171 -25.01476 -23.72413 -21.85698 -20.52659 -18.91427 -17.90941 -17.20408 -16.52576 -15.80312 -15.65487 -15.12538 -14.84438 -14.59104 -14.24235 -14.07529 -13.66957 -13.49508 -13.32783 -13.10196 -12.72811 -12.53156 -12.25127 -12.14786 -11.96025 -11.62721 -11.03780 -10.59896 -10.41488 -9.66446 -8.69958 -6.39011 0.59933 1.38458 1.48750 1.57070 1.58384 1.77386 2.52530 2.92313 3.14058 3.20906 3.80810 4.02052 4.10683 4.16962 4.30926 4.47063 4.57605 4.68640 4.77329 4.82295 4.99417 5.05565 5.09767 5.11057 5.24627 5.51726 5.90820 6.17590 6.55025 6.64437 6.86023 7.36786 8.71550 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.010457 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.347105 B = 2676.972783 C = 3195.765826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 N -0.482 5.482 4 N -0.259 5.259 5 C 0.113 3.887 6 C -0.073 4.073 7 C -0.133 4.133 8 H 0.129 0.871 9 C 0.052 3.948 10 C -0.608 4.608 11 H 0.045 0.955 12 C -0.032 4.032 13 N -0.934 5.934 14 Si 1.110 2.890 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.494 3.506 19 O -0.531 6.531 20 H 0.057 0.943 21 H 0.106 0.894 22 H 0.025 0.975 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.088 0.912 28 H -0.020 1.020 29 H 0.036 0.964 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -7.830 -9.768 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.302 5.302 4 N -0.065 5.065 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.156 4.156 8 H 0.147 0.853 9 C 0.014 3.986 10 C -0.646 4.646 11 H 0.063 0.937 12 C -0.230 4.230 13 N -0.571 5.571 14 Si 0.932 3.068 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.188 1.188 18 C 0.283 3.717 19 O -0.405 6.405 20 H 0.076 0.924 21 H 0.124 0.876 22 H 0.045 0.955 23 H 0.134 0.866 24 H 0.103 0.897 25 H 0.135 0.865 26 H 0.118 0.882 27 H 0.107 0.893 28 H -0.002 1.002 29 H 0.054 0.946 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.079 -8.077 -8.500 12.415 hybrid contribution 0.415 -0.494 -0.389 0.754 sum 4.493 -8.572 -8.889 13.141 Atomic orbital electron populations 1.22134 0.94931 1.03977 1.01029 1.21667 0.95056 0.77626 1.04668 1.50069 1.63160 1.14569 1.02437 1.74536 1.15183 1.06501 1.10320 1.26047 0.93696 0.93634 0.94619 1.20566 1.04495 0.93362 0.94732 1.21823 1.03933 0.95286 0.94593 0.85325 1.18748 0.91537 0.92071 0.96282 1.22324 1.28162 1.20926 0.93180 0.93668 1.27177 0.92376 0.92570 1.10857 1.70930 1.37803 1.39605 1.08807 0.83015 0.77620 0.76366 0.69787 1.20192 1.21193 1.18814 1.21617 0.76873 0.88036 0.85219 1.90660 1.53786 1.76673 1.19342 0.92392 0.87571 0.95544 0.86566 0.89663 0.86468 0.88209 0.89298 1.00183 0.94628 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 10.24 71.98 0.74 -3.74 16 2 C 0.13 3.76 6.96 86.38 0.60 4.36 16 3 N -0.48 -18.15 3.54 -461.65 -1.64 -19.79 16 4 N -0.26 -8.82 12.02 -40.85 -0.49 -9.31 16 5 C 0.11 3.67 6.93 46.83 0.32 3.99 16 6 C -0.07 -1.56 10.49 71.23 0.75 -0.82 16 7 C -0.13 -5.61 3.02 -11.74 -0.04 -5.65 16 8 H 0.13 5.18 8.14 -2.39 -0.02 5.16 16 9 C 0.05 2.65 3.81 29.85 0.11 2.76 16 10 C -0.61 -35.86 8.36 25.60 0.21 -35.64 16 11 H 0.04 2.76 7.05 -2.91 -0.02 2.74 16 12 C -0.03 -1.90 5.46 84.65 0.46 -1.43 16 13 N -0.93 -57.89 13.65 21.45 0.29 -57.60 16 14 Si 1.11 53.12 29.90 68.60 2.05 55.17 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 C 0.49 22.79 7.56 87.94 0.66 23.45 16 19 O -0.53 -28.43 16.61 -3.08 -0.05 -28.48 16 20 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 24 H 0.09 2.46 8.04 -2.39 -0.02 2.44 16 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.09 1.97 7.57 -2.39 -0.02 1.95 16 28 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 29 H 0.04 1.75 7.45 -2.38 -0.02 1.73 16 30 H 0.26 15.86 7.22 -92.71 -0.67 15.19 16 Total: -1.00 -75.06 262.20 5.22 -69.84 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.22 Total: 2.88 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.83 Total: -12.71 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.83 Total: -86.70 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.05 Total: 55.17 kcal Total: -75.06 5.22 -69.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.963 kcal (2) G-P(sol) polarization free energy of solvation -75.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds