Wall clock time and date at job start Sun Mar 29 2020 21:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47362 * 2 1 4 4 N 1.39147 * 124.43856 * 269.98219 * 3 2 1 5 5 C 1.27567 * 113.16728 * 179.97438 * 4 3 2 6 6 C 1.50691 * 126.41894 * 179.97438 * 5 4 3 7 7 C 1.51438 * 107.16358 * 359.97438 * 5 4 3 8 8 H 1.09000 * 110.60867 * 241.33189 * 7 5 4 9 9 C 1.53002 * 110.60905 * 118.51321 * 7 5 4 10 10 C 1.50706 * 109.46931 * 177.14652 * 9 7 5 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 7 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.35306 * 124.39824 * 89.86529 * 3 2 1 19 19 O 1.21300 * 127.67814 * 0.02562 * 18 3 2 20 20 H 1.08999 * 109.46632 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 22 22 H 1.08995 * 109.47144 * 60.00386 * 1 2 3 23 23 H 1.09004 * 109.47399 * 240.00263 * 2 1 3 24 24 H 1.08996 * 109.47738 * 120.00343 * 2 1 3 25 25 H 1.09004 * 109.47444 * 270.04272 * 6 5 4 26 26 H 1.08998 * 109.47474 * 30.04051 * 6 5 4 27 27 H 1.08999 * 109.47160 * 150.04439 * 6 5 4 28 28 H 1.09000 * 109.46986 * 57.15210 * 9 7 5 29 29 H 1.08993 * 109.47662 * 297.14987 * 9 7 5 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2811 2.1230 -1.1476 5 6 2.6976 3.3027 -0.8983 6 6 3.0698 4.3531 -1.9126 7 6 2.7479 3.4498 0.6081 8 1 2.0789 4.2443 0.9386 9 6 4.1790 3.7241 1.0749 10 6 4.1888 3.9353 2.5671 11 1 3.2668 3.8790 3.1265 12 6 5.3751 4.2003 3.2179 13 7 5.3838 4.3841 4.5201 14 14 6.9699 4.2983 2.2502 15 1 7.5935 2.9521 2.1860 16 1 6.6849 4.7780 0.8739 17 1 7.8988 5.2427 2.9212 18 6 2.2708 2.1028 1.1164 19 8 2.1442 1.7516 2.2706 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.1283 4.2636 -2.1568 26 1 2.4756 4.2129 -2.8156 27 1 2.8747 5.3426 -1.4993 28 1 4.5579 4.6177 0.5790 29 1 4.8124 2.8733 0.8242 30 1 6.2184 4.5701 4.9781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306183814.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:22 Heat of formation + Delta-G solvation = 10.535629 kcal Electronic energy + Delta-G solvation = -13988.607481 eV Core-core repulsion = 11592.229798 eV Total energy + Delta-G solvation = -2396.377682 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.72539 -36.79606 -34.79286 -32.98161 -30.96950 -30.59967 -27.54042 -26.33785 -23.21468 -21.66132 -20.09025 -18.95700 -16.94062 -16.21910 -15.46121 -14.74549 -14.40200 -14.12882 -13.71513 -13.32176 -13.15580 -12.80857 -12.41438 -12.26934 -12.01608 -11.90735 -11.53709 -11.25260 -11.07443 -10.86161 -10.48743 -10.04881 -9.63870 -9.42681 -8.79548 -8.53249 -8.14978 -6.02114 -4.01190 2.10848 2.83409 3.21806 3.29127 3.36254 3.36745 4.40222 4.43216 4.65740 5.14587 5.28191 5.28351 5.39083 5.45500 5.67359 5.69778 5.79211 5.80613 5.95333 6.03993 6.18857 6.26614 6.57793 6.83936 6.93933 7.06802 7.67442 8.16025 8.52218 8.54129 9.08469 9.56853 11.11237 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.010404 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.389313 B = 2690.726497 C = 3185.640488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 N -0.486 5.486 4 N -0.254 5.254 5 C 0.092 3.908 6 C -0.073 4.073 7 C -0.123 4.123 8 H 0.126 0.874 9 C 0.019 3.981 10 C -0.518 4.518 11 H 0.083 0.917 12 C 0.070 3.930 13 N -0.897 5.897 14 Si 0.874 3.126 15 H -0.278 1.278 16 H -0.264 1.264 17 H -0.286 1.286 18 C 0.509 3.491 19 O -0.475 6.475 20 H 0.068 0.932 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.013 0.987 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -3.125 -13.529 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 N -0.309 5.309 4 N -0.061 5.061 5 C -0.101 4.101 6 C -0.132 4.132 7 C -0.147 4.147 8 H 0.143 0.857 9 C -0.019 4.019 10 C -0.556 4.556 11 H 0.101 0.899 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.701 3.299 15 H -0.204 1.204 16 H -0.189 1.189 17 H -0.211 1.211 18 C 0.296 3.704 19 O -0.344 6.344 20 H 0.086 0.914 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.982 -4.157 -13.323 15.185 hybrid contribution 1.054 0.352 0.325 1.157 sum -4.928 -3.805 -12.998 14.413 Atomic orbital electron populations 1.22169 0.95735 1.02129 1.02552 1.21288 0.94194 0.79528 1.03265 1.49969 1.64425 1.13481 1.03011 1.74437 1.14201 1.05929 1.11515 1.25430 0.95068 0.93377 0.96198 1.20282 1.02557 0.94979 0.95371 1.21831 1.04097 0.97429 0.91348 0.85679 1.19336 0.87059 0.96974 0.98564 1.21069 0.96482 1.48315 0.89744 0.89942 1.24964 0.98691 0.94758 0.94734 1.69910 1.27031 1.48740 1.07879 0.86884 0.84060 0.78241 0.80746 1.20410 1.18886 1.21140 1.21431 0.76428 0.87499 0.85049 1.90758 1.50421 1.75967 1.17217 0.91358 0.92325 0.92242 0.89951 0.89587 0.89625 0.90456 0.89520 0.94548 0.96884 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.14 2.05 6.96 -4.04 -0.03 2.02 16 3 N -0.49 -9.03 3.55 -59.80 -0.21 -9.24 16 4 N -0.25 -4.37 12.02 35.52 0.43 -3.94 16 5 C 0.09 1.50 6.93 -78.73 -0.55 0.96 16 6 C -0.07 -0.83 10.49 36.00 0.38 -0.46 16 7 C -0.12 -2.51 2.98 -92.08 -0.27 -2.78 16 8 H 0.13 2.44 8.14 -51.93 -0.42 2.02 16 9 C 0.02 0.45 3.56 -27.88 -0.10 0.35 16 10 C -0.52 -14.97 8.94 -34.44 -0.31 -15.28 16 11 H 0.08 2.65 7.48 -52.49 -0.39 2.26 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 14 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C 0.51 11.29 7.60 -10.27 -0.08 11.21 16 19 O -0.47 -12.32 16.82 5.54 0.09 -12.23 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 29 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 261.49 15.07 3.94 3.94 Total: -1.00 -34.27 261.49 -4.45 -38.72 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.13 Total: -2.97 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.67 Total: -3.73 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.99 Total: -40.57 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.27 -4.45 -38.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183814.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds