Wall clock time and date at job start Sun Mar 29 2020 21:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34813 * 126.59423 * 2 1 4 4 C 1.36592 * 106.84007 * 180.13172 * 3 2 1 5 5 C 1.47526 * 125.76917 * 179.89847 * 4 3 2 6 6 O 1.21595 * 119.99929 * 359.71665 * 5 4 3 7 7 N 1.34773 * 119.99818 * 179.72023 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47148 * 179.72251 * 8 7 5 10 10 H 1.08002 * 120.00318 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99922 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99824 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46763 * 60.00502 * 13 11 9 15 15 H 1.48506 * 109.46865 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47267 * 300.00432 * 13 11 9 17 17 N 1.34402 * 108.45788 * 359.63812 * 4 3 2 18 18 N 1.28756 * 109.52328 * 0.22690 * 17 4 3 19 19 H 1.08994 * 109.47188 * 270.23733 * 1 2 3 20 20 H 1.09002 * 109.47590 * 30.24627 * 1 2 3 21 21 H 1.09012 * 109.47029 * 150.24323 * 1 2 3 22 22 H 1.08004 * 126.57385 * 359.97438 * 3 2 1 23 23 H 0.97005 * 120.00161 * 359.72198 * 7 5 4 24 24 H 1.09001 * 109.46512 * 299.72412 * 8 7 5 25 25 H 1.08998 * 109.47174 * 59.71534 * 8 7 5 26 26 H 0.97005 * 119.99648 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6207 -0.0030 5 6 4.7704 1.4558 -0.0062 6 8 4.6754 2.6681 -0.0116 7 7 5.9865 0.8751 -0.0033 8 6 7.1943 1.7044 -0.0060 9 6 8.4126 0.8175 0.0050 10 1 8.2988 -0.2564 0.0136 11 6 9.6727 1.3772 0.0042 12 7 9.8113 2.6850 -0.0057 13 14 11.1829 0.2779 0.0185 14 1 11.1750 -0.5898 -1.1867 15 1 12.4071 1.1185 0.0145 16 1 11.1673 -0.5689 1.2382 17 7 3.5238 -0.7229 0.0033 18 7 2.3009 -1.1257 0.0052 19 1 -0.3633 0.0043 1.0276 20 1 -0.3634 0.8878 -0.5176 21 1 -0.3634 -0.8923 -0.5101 22 1 1.9560 2.1162 -0.0004 23 1 6.0623 -0.0920 0.0050 24 1 7.2057 2.3266 -0.9009 25 1 7.2000 2.3408 0.8790 26 1 10.6979 3.0787 -0.0060 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306199431.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:45 Heat of formation + Delta-G solvation = 27.445792 kcal Electronic energy + Delta-G solvation = -13001.600518 eV Core-core repulsion = 10502.415772 eV Total energy + Delta-G solvation = -2499.184746 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.18646 -40.21086 -36.20203 -35.57046 -34.31045 -32.06052 -29.60544 -28.41014 -25.45964 -23.74032 -23.06956 -21.43375 -19.60830 -18.11907 -17.23966 -17.09954 -16.91709 -16.17987 -15.94972 -15.59196 -14.76284 -14.26193 -14.07670 -13.86849 -13.77484 -13.12427 -12.95379 -12.68287 -12.25324 -12.22786 -11.51001 -11.29808 -11.12266 -10.79131 -10.38641 -9.82046 -8.28295 -6.44319 0.16871 0.64017 1.21349 1.43958 1.48224 1.56319 2.30118 2.30420 2.50715 3.06300 3.25607 3.56511 3.93650 4.00808 4.41473 4.51330 4.70879 4.80078 5.10469 5.24692 5.45107 5.48796 5.64714 5.84225 6.63515 6.71118 6.98578 7.20549 7.35649 8.83597 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.072899 B = 0.006067 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.001528 B = 4614.394309 C = 4977.941781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.350 5.350 3 C 0.112 3.888 4 C -0.122 4.122 5 C 0.586 3.414 6 O -0.586 6.586 7 N -0.696 5.696 8 C 0.266 3.734 9 C -0.562 4.562 10 H 0.077 0.923 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.984 3.016 14 H -0.264 1.264 15 H -0.281 1.281 16 H -0.264 1.264 17 N -0.230 5.230 18 N -0.090 5.090 19 H 0.109 0.891 20 H 0.131 0.869 21 H 0.111 0.889 22 H 0.240 0.760 23 H 0.407 0.593 24 H -0.002 1.002 25 H -0.003 1.003 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.845 -5.451 -0.015 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.135 5.135 3 C -0.047 4.047 4 C -0.262 4.262 5 C 0.371 3.629 6 O -0.467 6.467 7 N -0.343 5.343 8 C 0.144 3.856 9 C -0.599 4.599 10 H 0.096 0.904 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.806 3.194 14 H -0.189 1.189 15 H -0.206 1.206 16 H -0.189 1.189 17 N -0.103 5.103 18 N -0.070 5.070 19 H 0.127 0.873 20 H 0.149 0.851 21 H 0.129 0.871 22 H 0.256 0.744 23 H 0.243 0.757 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.779 -6.004 -0.019 19.716 hybrid contribution 0.831 0.509 0.021 0.975 sum -17.948 -5.495 0.003 18.771 Atomic orbital electron populations 1.22764 0.68977 1.07930 1.06717 1.50733 1.10764 1.04311 1.47681 1.23784 0.88740 0.96401 0.95735 1.21427 0.95046 0.90321 1.19431 1.17295 0.82721 0.86403 0.76432 1.90724 1.87356 1.14629 1.54021 1.46121 1.05579 1.11367 1.71276 1.18668 0.81379 0.90649 0.94877 1.21570 0.91017 0.93972 1.53374 0.90447 1.26002 1.02757 0.96709 0.93712 1.70112 1.24866 1.11868 1.49696 0.85229 0.76680 0.78037 0.79411 1.18862 1.20611 1.18857 1.74608 1.13967 1.10885 1.10871 1.81839 0.93417 1.08051 1.23735 0.87252 0.85124 0.87057 0.74424 0.75720 0.98448 0.98457 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.51 127.77 1.47 1.92 15 2 N -0.35 -6.90 4.03 -368.58 -1.49 -8.39 15 3 C 0.11 2.63 11.31 83.85 0.95 3.58 15 4 C -0.12 -4.22 6.99 40.82 0.29 -3.94 15 5 C 0.59 25.86 7.82 86.69 0.68 26.54 15 6 O -0.59 -28.89 16.86 -4.02 -0.07 -28.96 15 7 N -0.70 -33.15 5.55 -470.01 -2.61 -35.75 15 8 C 0.27 15.22 5.43 85.63 0.46 15.69 15 9 C -0.56 -32.07 9.28 25.60 0.24 -31.84 15 10 H 0.08 4.12 7.60 -2.91 -0.02 4.10 15 11 C 0.01 0.46 5.46 84.66 0.46 0.93 15 12 N -0.93 -56.44 13.29 21.45 0.28 -56.15 15 13 Si 0.98 43.68 29.54 68.60 2.03 45.70 15 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 15 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 16 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 17 N -0.23 -8.01 12.04 -49.99 -0.60 -8.61 15 18 N -0.09 -2.59 13.78 37.02 0.51 -2.08 15 19 H 0.11 0.31 8.14 -2.39 -0.02 0.29 15 20 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 15 21 H 0.11 0.49 8.14 -2.38 -0.02 0.47 15 22 H 0.24 3.76 8.06 -2.91 -0.02 3.73 15 23 H 0.41 17.88 8.01 -92.70 -0.74 17.14 15 24 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 25 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 26 H 0.27 15.31 8.31 -92.70 -0.77 14.54 15 Total: -1.00 -76.99 246.88 3.07 -73.92 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.47 Total: 7.44 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 4.55 Total: 12.88 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -3.90 Total: -110.99 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.07 Total: -28.96 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.99 3.07 -73.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306199431.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.369 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds