Wall clock time and date at job start Sun Mar 29 2020 21:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86799 * 120.00493 * 2 1 4 4 H 1.48494 * 109.47123 * 240.00754 * 3 2 1 5 5 H 1.48505 * 109.46798 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47440 * 120.00266 * 3 2 1 7 7 C 1.38843 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99994 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.34705 * 117.00004 * 179.97438 * 9 7 2 11 11 O 1.21485 * 120.00307 * 359.97438 * 10 9 7 12 12 C 1.47863 * 120.00068 * 179.97438 * 10 9 7 13 13 C 1.39478 * 119.70245 * 180.02562 * 12 10 9 14 14 C 1.38435 * 119.08706 * 180.02562 * 13 12 10 15 15 C 1.38918 * 118.47929 * 359.97438 * 14 13 12 16 16 F 1.35096 * 120.34423 * 179.97438 * 15 14 13 17 17 C 1.38898 * 119.31075 * 359.97438 * 15 14 13 18 18 N 1.31442 * 120.86885 * 0.02681 * 17 15 14 19 19 H 0.97006 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.45594 * 0.27265 * 13 12 10 21 21 H 1.08003 * 120.75604 * 180.02562 * 14 13 12 22 22 H 1.07999 * 119.56732 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6176 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6963 1.2124 7 6 2.0080 -1.2025 -0.0005 8 1 3.0881 -1.2025 -0.0010 9 8 1.3339 -2.3701 -0.0005 10 6 2.0675 -3.4998 -0.0016 11 8 3.2807 -3.4363 -0.0030 12 6 1.3962 -4.8173 -0.0011 13 6 2.1619 -5.9831 -0.0017 14 6 1.5202 -7.2097 -0.0017 15 6 0.1312 -7.2307 -0.0007 16 9 -0.5337 -8.4067 -0.0012 17 6 -0.5670 -6.0299 0.0009 18 7 0.0694 -4.8798 0.0010 19 1 -0.4850 0.8401 0.0004 20 1 3.2406 -5.9296 0.0019 21 1 2.0866 -8.1294 -0.0018 22 1 -1.6469 -6.0413 0.0014 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306240346.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:23 Heat of formation + Delta-G solvation = -84.415959 kcal Electronic energy + Delta-G solvation = -12952.569584 eV Core-core repulsion = 10195.062430 eV Total energy + Delta-G solvation = -2757.507154 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 211.043 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.96089 -40.03370 -38.51362 -35.25978 -32.51302 -32.18211 -30.82369 -25.88123 -24.09424 -23.59126 -20.74670 -17.97330 -17.70637 -17.32907 -16.80222 -15.78175 -15.33593 -14.68083 -14.44150 -14.35642 -13.75861 -13.40471 -13.00630 -12.71572 -12.19689 -11.67168 -11.26945 -10.52054 -10.50323 -9.95019 -9.87968 -9.59721 -9.11248 -8.82661 -8.67312 -6.54302 -4.14695 0.70804 1.23602 3.03012 3.13115 3.17847 3.27488 3.76196 4.05370 4.18605 4.26249 4.59152 4.76715 4.94069 5.07184 5.38215 5.75971 5.81273 5.93085 6.49604 6.81593 7.26204 7.79927 7.96480 8.59024 8.91342 9.74647 10.61452 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.071308 B = 0.007185 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.570053 B = 3895.950143 C = 4278.678918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.042 3.958 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.374 4.374 8 H 0.101 0.899 9 O -0.176 6.176 10 C 0.429 3.571 11 O -0.553 6.553 12 C 0.122 3.878 13 C -0.098 4.098 14 C -0.117 4.117 15 C 0.044 3.956 16 F -0.133 7.133 17 C 0.075 3.925 18 N -0.411 5.411 19 H 0.274 0.726 20 H 0.156 0.844 21 H 0.150 0.850 22 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -10.358 0.003 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.450 4.450 8 H 0.118 0.882 9 O -0.080 6.080 10 C 0.277 3.723 11 O -0.452 6.452 12 C -0.014 4.014 13 C -0.118 4.118 14 C -0.143 4.143 15 C 0.022 3.978 16 F -0.112 7.112 17 C -0.087 4.087 18 N -0.121 5.121 19 H 0.084 0.916 20 H 0.174 0.826 21 H 0.168 0.832 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.323 -9.376 0.005 9.382 hybrid contribution 0.661 -0.337 -0.001 0.742 sum 0.337 -9.713 0.004 9.719 Atomic orbital electron populations 1.70004 1.06215 1.28350 1.43002 1.25502 0.95885 0.99220 0.95876 0.85652 0.78671 0.78794 0.79568 1.19213 1.20162 1.19218 1.21437 0.92727 0.79885 1.50913 0.88181 1.83989 1.38808 1.12920 1.72241 1.20096 0.85324 0.84664 0.82231 1.90647 1.14309 1.87180 1.53048 1.20655 0.89056 0.92954 0.98761 1.21979 1.02582 0.90292 0.96969 1.21529 0.92527 0.99572 1.00687 1.19078 0.91241 0.82525 1.04960 1.91495 1.80638 1.45169 1.93881 1.23053 1.01391 0.85770 0.98453 1.67956 1.09492 1.26962 1.07736 0.91557 0.82590 0.83242 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.42 13.67 55.49 0.76 -23.66 14 2 C 0.04 1.17 5.50 -17.52 -0.10 1.08 14 3 Si 0.95 20.74 29.55 -169.99 -5.02 15.71 14 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 14 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 7 C -0.37 -11.01 9.65 30.96 0.30 -10.71 14 8 H 0.10 2.90 6.86 -52.48 -0.36 2.54 14 9 O -0.18 -5.19 9.55 -21.49 -0.21 -5.40 14 10 C 0.43 11.13 7.88 34.67 0.27 11.40 14 11 O -0.55 -14.85 15.56 -19.25 -0.30 -15.15 14 12 C 0.12 2.57 6.74 -83.04 -0.56 2.01 14 13 C -0.10 -1.60 9.63 -39.05 -0.38 -1.98 14 14 C -0.12 -1.54 10.15 -39.26 -0.40 -1.94 14 15 C 0.04 0.61 7.36 -39.09 -0.29 0.32 14 16 F -0.13 -1.71 17.28 2.25 0.04 -1.67 14 17 C 0.08 1.18 11.17 -17.47 -0.20 0.98 14 18 N -0.41 -8.39 10.11 -9.76 -0.10 -8.49 14 19 H 0.27 7.23 8.31 -40.82 -0.34 6.89 14 20 H 0.16 2.36 7.64 -52.49 -0.40 1.96 14 21 H 0.15 1.43 8.06 -52.48 -0.42 1.01 14 22 H 0.17 2.12 8.06 -52.49 -0.42 1.70 14 LS Contribution 224.05 15.07 3.38 3.38 Total: -1.00 -32.42 224.05 -3.54 -35.95 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -0.74 Total: -1.85 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.34 Total: 1.17 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.66 Total: -32.15 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.50 Total: -20.55 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -32.42 -3.54 -35.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306240346.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.464 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds