Wall clock time and date at job start Sun Mar 29 2020 21:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31387 * 1
3 3 Si 1.86799 * 120.00493 * 2 1
4 4 H 1.48494 * 109.47123 * 240.00754 * 3 2 1
5 5 H 1.48505 * 109.46798 * 0.02562 * 3 2 1
6 6 H 1.48496 * 109.47440 * 120.00266 * 3 2 1
7 7 C 1.38843 * 119.99695 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99994 * 179.97438 * 7 2 1
9 9 O 1.34828 * 120.00188 * 359.97438 * 7 2 1
10 10 C 1.34705 * 117.00004 * 179.97438 * 9 7 2
11 11 O 1.21485 * 120.00307 * 359.97438 * 10 9 7
12 12 C 1.47863 * 120.00068 * 179.97438 * 10 9 7
13 13 C 1.39478 * 119.70245 * 180.02562 * 12 10 9
14 14 C 1.38435 * 119.08706 * 180.02562 * 13 12 10
15 15 C 1.38918 * 118.47929 * 359.97438 * 14 13 12
16 16 F 1.35096 * 120.34423 * 179.97438 * 15 14 13
17 17 C 1.38898 * 119.31075 * 359.97438 * 15 14 13
18 18 N 1.31442 * 120.86885 * 0.02681 * 17 15 14
19 19 H 0.97006 * 119.99768 * 359.97438 * 1 2 3
20 20 H 1.07998 * 120.45594 * 0.27265 * 13 12 10
21 21 H 1.08003 * 120.75604 * 180.02562 * 14 13 12
22 22 H 1.07999 * 119.56732 * 179.97438 * 17 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3139 0.0000 0.0000
3 14 2.2480 1.6176 0.0000
4 1 3.1016 1.6963 -1.2125
5 1 1.2830 2.7464 0.0006
6 1 3.1018 1.6963 1.2124
7 6 2.0080 -1.2025 -0.0005
8 1 3.0881 -1.2025 -0.0010
9 8 1.3339 -2.3701 -0.0005
10 6 2.0675 -3.4998 -0.0016
11 8 3.2807 -3.4363 -0.0030
12 6 1.3962 -4.8173 -0.0011
13 6 2.1619 -5.9831 -0.0017
14 6 1.5202 -7.2097 -0.0017
15 6 0.1312 -7.2307 -0.0007
16 9 -0.5337 -8.4067 -0.0012
17 6 -0.5670 -6.0299 0.0009
18 7 0.0694 -4.8798 0.0010
19 1 -0.4850 0.8401 0.0004
20 1 3.2406 -5.9296 0.0019
21 1 2.0866 -8.1294 -0.0018
22 1 -1.6469 -6.0413 0.0014
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306240346.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:55:23
Heat of formation + Delta-G solvation = -84.415959 kcal
Electronic energy + Delta-G solvation = -12952.569584 eV
Core-core repulsion = 10195.062430 eV
Total energy + Delta-G solvation = -2757.507154 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 211.043 amu
Computer time = 0.11 seconds
Orbital eigenvalues (eV)
-48.96089 -40.03370 -38.51362 -35.25978 -32.51302 -32.18211 -30.82369 -25.88123
-24.09424 -23.59126 -20.74670 -17.97330 -17.70637 -17.32907 -16.80222 -15.78175
-15.33593 -14.68083 -14.44150 -14.35642 -13.75861 -13.40471 -13.00630 -12.71572
-12.19689 -11.67168 -11.26945 -10.52054 -10.50323 -9.95019 -9.87968 -9.59721
-9.11248 -8.82661 -8.67312 -6.54302 -4.14695 0.70804 1.23602 3.03012
3.13115 3.17847 3.27488 3.76196 4.05370 4.18605 4.26249 4.59152
4.76715 4.94069 5.07184 5.38215 5.75971 5.81273 5.93085 6.49604
6.81593 7.26204 7.79927 7.96480 8.59024 8.91342 9.74647 10.61452
Molecular weight = 211.04amu
Principal moments of inertia in cm(-1)
A = 0.071308 B = 0.007185 C = 0.006543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 392.570053 B = 3895.950143 C = 4278.678918
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.841 5.841
2 C 0.042 3.958
3 Si 0.949 3.051
4 H -0.267 1.267
5 H -0.277 1.277
6 H -0.267 1.267
7 C -0.374 4.374
8 H 0.101 0.899
9 O -0.176 6.176
10 C 0.429 3.571
11 O -0.553 6.553
12 C 0.122 3.878
13 C -0.098 4.098
14 C -0.117 4.117
15 C 0.044 3.956
16 F -0.133 7.133
17 C 0.075 3.925
18 N -0.411 5.411
19 H 0.274 0.726
20 H 0.156 0.844
21 H 0.150 0.850
22 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.053 -10.358 0.003 10.358
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.476 5.476
2 C -0.165 4.165
3 Si 0.773 3.227
4 H -0.192 1.192
5 H -0.202 1.202
6 H -0.192 1.192
7 C -0.450 4.450
8 H 0.118 0.882
9 O -0.080 6.080
10 C 0.277 3.723
11 O -0.452 6.452
12 C -0.014 4.014
13 C -0.118 4.118
14 C -0.143 4.143
15 C 0.022 3.978
16 F -0.112 7.112
17 C -0.087 4.087
18 N -0.121 5.121
19 H 0.084 0.916
20 H 0.174 0.826
21 H 0.168 0.832
22 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -0.323 -9.376 0.005 9.382
hybrid contribution 0.661 -0.337 -0.001 0.742
sum 0.337 -9.713 0.004 9.719
Atomic orbital electron populations
1.70004 1.06215 1.28350 1.43002 1.25502 0.95885 0.99220 0.95876
0.85652 0.78671 0.78794 0.79568 1.19213 1.20162 1.19218 1.21437
0.92727 0.79885 1.50913 0.88181 1.83989 1.38808 1.12920 1.72241
1.20096 0.85324 0.84664 0.82231 1.90647 1.14309 1.87180 1.53048
1.20655 0.89056 0.92954 0.98761 1.21979 1.02582 0.90292 0.96969
1.21529 0.92527 0.99572 1.00687 1.19078 0.91241 0.82525 1.04960
1.91495 1.80638 1.45169 1.93881 1.23053 1.01391 0.85770 0.98453
1.67956 1.09492 1.26962 1.07736 0.91557 0.82590 0.83242 0.81314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -24.42 13.67 55.49 0.76 -23.66 14
2 C 0.04 1.17 5.50 -17.52 -0.10 1.08 14
3 Si 0.95 20.74 29.55 -169.99 -5.02 15.71 14
4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14
5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 14
6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14
7 C -0.37 -11.01 9.65 30.96 0.30 -10.71 14
8 H 0.10 2.90 6.86 -52.48 -0.36 2.54 14
9 O -0.18 -5.19 9.55 -21.49 -0.21 -5.40 14
10 C 0.43 11.13 7.88 34.67 0.27 11.40 14
11 O -0.55 -14.85 15.56 -19.25 -0.30 -15.15 14
12 C 0.12 2.57 6.74 -83.04 -0.56 2.01 14
13 C -0.10 -1.60 9.63 -39.05 -0.38 -1.98 14
14 C -0.12 -1.54 10.15 -39.26 -0.40 -1.94 14
15 C 0.04 0.61 7.36 -39.09 -0.29 0.32 14
16 F -0.13 -1.71 17.28 2.25 0.04 -1.67 14
17 C 0.08 1.18 11.17 -17.47 -0.20 0.98 14
18 N -0.41 -8.39 10.11 -9.76 -0.10 -8.49 14
19 H 0.27 7.23 8.31 -40.82 -0.34 6.89 14
20 H 0.16 2.36 7.64 -52.49 -0.40 1.96 14
21 H 0.15 1.43 8.06 -52.48 -0.42 1.01 14
22 H 0.17 2.12 8.06 -52.49 -0.42 1.70 14
LS Contribution 224.05 15.07 3.38 3.38
Total: -1.00 -32.42 224.05 -3.54 -35.95
By element:
Atomic # 1 Polarization: -1.11 SS G_CDS: -0.74 Total: -1.85 kcal
Atomic # 6 Polarization: 2.51 SS G_CDS: -1.34 Total: 1.17 kcal
Atomic # 7 Polarization: -32.80 SS G_CDS: 0.66 Total: -32.15 kcal
Atomic # 8 Polarization: -20.05 SS G_CDS: -0.50 Total: -20.55 kcal
Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal
Total LS contribution 3.38 Total: 3.38 kcal
Total: -32.42 -3.54 -35.95 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306240346.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.464 kcal
(2) G-P(sol) polarization free energy of solvation -32.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.11 seconds