Wall clock time and date at job start Sun Mar 29 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48648 * 110.99972 * 2 1 4 4 C 1.55212 * 103.39641 * 200.98156 * 3 2 1 5 5 C 1.53383 * 102.59580 * 36.38125 * 4 3 2 6 6 C 1.53918 * 111.11034 * 100.27905 * 5 4 3 7 7 C 1.55360 * 101.35389 * 86.09347 * 6 5 4 8 8 N 1.47534 * 104.86262 * 36.06394 * 7 6 5 9 9 C 1.36931 * 125.67338 * 156.01396 * 8 7 6 10 10 H 1.08008 * 120.00116 * 192.91625 * 9 8 7 11 11 C 1.38806 * 120.00071 * 12.91064 * 9 8 7 12 12 N 1.31618 * 120.00448 * 204.41602 * 11 9 8 13 13 Si 1.86803 * 119.99966 * 24.41949 * 11 9 8 14 14 H 1.48501 * 109.47032 * 269.99942 * 13 11 9 15 15 H 1.48501 * 109.46826 * 30.00015 * 13 11 9 16 16 H 1.48495 * 109.47200 * 149.99968 * 13 11 9 17 17 C 1.47337 * 108.65675 * 335.75528 * 8 7 6 18 18 C 1.48256 * 110.99494 * 242.54408 * 2 1 3 19 19 H 1.08997 * 109.47402 * 177.46140 * 1 2 3 20 20 H 1.09005 * 109.47211 * 297.45598 * 1 2 3 21 21 H 1.08999 * 109.47484 * 57.45932 * 1 2 3 22 22 H 1.09009 * 110.63822 * 319.45804 * 3 2 1 23 23 H 1.08999 * 110.63396 * 82.50165 * 3 2 1 24 24 H 1.08994 * 110.78574 * 278.10452 * 4 3 2 25 25 H 1.09001 * 110.79044 * 154.65322 * 4 3 2 26 26 H 1.08998 * 111.02825 * 204.31892 * 6 5 4 27 27 H 1.09008 * 111.02586 * 328.22820 * 6 5 4 28 28 H 1.09002 * 110.48069 * 277.18635 * 7 6 5 29 29 H 1.09005 * 110.31387 * 154.86348 * 7 6 5 30 30 H 0.97005 * 120.00229 * 354.59124 * 12 11 9 31 31 H 1.09003 * 109.97819 * 121.53670 * 17 8 7 32 32 H 1.09004 * 109.97038 * 242.76670 * 17 8 7 33 33 H 1.08997 * 110.04064 * 26.34116 * 18 2 1 34 34 H 1.09000 * 110.07736 * 264.91169 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3877 0.0000 4 6 3.4467 1.2183 -0.5406 5 6 3.2845 0.1078 -1.5862 6 6 3.2191 0.6912 -3.0090 7 6 4.7273 0.7909 -3.3684 8 7 5.3450 -0.3924 -2.7400 9 6 6.5132 -0.9878 -3.1348 10 1 6.7783 -1.9628 -2.7531 11 6 7.3566 -0.3385 -4.0258 12 7 8.1896 -1.0346 -4.7700 13 14 7.3095 1.5235 -4.1685 14 1 6.3205 1.9157 -5.2045 15 1 6.9169 2.1102 -2.8620 16 1 8.6535 2.0247 -4.5523 17 6 4.4993 -0.8232 -1.6131 18 6 2.0002 -0.6382 -1.2282 19 1 -0.3634 -1.0266 -0.0455 20 1 -0.3634 0.4738 0.9120 21 1 -0.3634 0.5528 -0.8663 22 1 1.4156 2.0243 -0.6631 23 1 2.0151 1.7940 1.0113 24 1 4.1230 0.9050 0.2546 25 1 3.7961 2.1398 -1.0063 26 1 2.6960 0.0151 -3.6852 27 1 2.7535 1.6768 -3.0065 28 1 5.1572 1.7050 -2.9590 29 1 4.8615 0.7592 -4.4496 30 1 8.2706 -1.9926 -4.6411 31 1 4.1756 -1.8532 -1.7628 32 1 5.0537 -0.7397 -0.6783 33 1 1.2773 -0.5474 -2.0389 34 1 2.2190 -1.6891 -1.0392 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306249081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:07 Heat of formation + Delta-G solvation = 32.692993 kcal Electronic energy + Delta-G solvation = -14640.587005 eV Core-core repulsion = 12381.003232 eV Total energy + Delta-G solvation = -2259.583773 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.77609 -36.42585 -32.88513 -31.00634 -29.30858 -28.80408 -26.29465 -24.28205 -22.74934 -21.12283 -20.54022 -18.80617 -17.27666 -15.76286 -15.50953 -14.73226 -14.36409 -14.01718 -13.55250 -13.36185 -12.94081 -12.79781 -12.42435 -11.74266 -11.59673 -11.45762 -11.22723 -11.15524 -10.94691 -10.64486 -10.34318 -10.14371 -9.82486 -9.51496 -9.18155 -8.45453 -8.37918 -7.00370 -6.26436 -3.14026 3.43945 3.54839 3.70052 4.07933 4.63541 4.75488 4.81441 4.94583 5.11850 5.31822 5.34857 5.39422 5.44598 5.58051 5.66319 5.76206 5.77783 5.88947 5.99081 6.03052 6.12863 6.27352 6.30936 6.47106 6.58917 6.66512 6.75024 6.83121 6.97147 7.05960 7.78593 8.39998 9.10042 9.65362 10.33846 11.21477 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060015 B = 0.008955 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.434398 B = 3126.089693 C = 3322.158162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.524 5.524 3 C 0.035 3.965 4 C -0.107 4.107 5 C -0.082 4.082 6 C -0.119 4.119 7 C 0.107 3.893 8 N -0.610 5.610 9 C -0.324 4.324 10 H 0.074 0.926 11 C -0.022 4.022 12 N -0.924 5.924 13 Si 1.066 2.934 14 H -0.295 1.295 15 H -0.287 1.287 16 H -0.300 1.300 17 C 0.151 3.849 18 C 0.052 3.948 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.025 0.975 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 5.159 7.750 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.018 4.018 8 N -0.337 5.337 9 C -0.452 4.452 10 H 0.092 0.908 11 C -0.222 4.222 12 N -0.566 5.566 13 Si 0.898 3.102 14 H -0.223 1.223 15 H -0.214 1.214 16 H -0.227 1.227 17 C 0.026 3.974 18 C -0.076 4.076 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.601 6.080 7.369 16.621 hybrid contribution -0.954 -0.887 0.163 1.313 sum -14.555 5.193 7.532 17.191 Atomic orbital electron populations 1.22491 0.88462 1.01762 1.00495 1.64853 1.07536 1.15085 1.37327 1.23324 0.95700 0.89682 1.00592 1.22436 0.95692 0.98373 0.97965 1.21531 0.95287 0.96065 0.95403 1.22764 0.98027 0.99822 0.95184 1.22087 0.90755 0.91113 0.97861 1.44918 1.24392 1.32625 1.31775 1.20054 0.96640 1.00615 1.27848 0.90775 1.25862 0.95462 1.06182 0.94743 1.70905 1.42348 1.08893 1.34417 0.83828 0.74780 0.76126 0.75454 1.22277 1.21394 1.22749 1.21262 0.89611 0.95138 0.91429 1.22816 0.95033 0.99439 0.90273 0.91520 0.91599 0.95630 0.93988 0.90376 0.90469 0.90873 0.91316 0.91795 0.95245 0.92445 0.92802 0.95284 0.95257 0.93606 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.40 60.06 0.56 0.74 16 2 N -0.52 -7.04 5.57 -238.90 -1.33 -8.37 16 3 C 0.03 0.44 6.59 -1.68 -0.01 0.43 16 4 C -0.11 -1.62 6.04 -25.36 -0.15 -1.77 16 5 C -0.08 -1.38 0.74 -153.91 -0.11 -1.49 16 6 C -0.12 -2.08 5.75 -25.00 -0.14 -2.22 16 7 C 0.11 2.38 4.60 -2.22 -0.01 2.37 16 8 N -0.61 -15.42 3.28 -170.21 -0.56 -15.98 16 9 C -0.32 -9.54 10.45 -15.06 -0.16 -9.70 16 10 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 11 C -0.02 -0.68 5.42 -17.43 -0.09 -0.77 16 12 N -0.92 -29.50 13.70 55.49 0.76 -28.73 16 13 Si 1.07 27.26 24.69 -169.99 -4.20 23.06 16 14 H -0.29 -7.12 6.62 56.52 0.37 -6.75 16 15 H -0.29 -6.97 6.21 56.52 0.35 -6.62 16 16 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 17 C 0.15 3.19 6.45 -3.55 -0.02 3.16 16 18 C 0.05 0.76 6.05 -3.19 -0.02 0.75 16 19 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.03 0.26 8.01 -51.93 -0.42 -0.15 16 22 H 0.04 0.50 7.95 -51.92 -0.41 0.09 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 1.22 7.49 -51.93 -0.39 0.83 16 25 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 26 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 27 H 0.06 0.96 7.94 -51.92 -0.41 0.54 16 28 H 0.03 0.67 5.55 -51.93 -0.29 0.38 16 29 H 0.06 1.36 6.25 -51.93 -0.32 1.04 16 30 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 31 H 0.03 0.62 7.46 -51.93 -0.39 0.23 16 32 H 0.03 0.63 7.43 -51.93 -0.39 0.25 16 33 H 0.05 0.63 7.21 -51.93 -0.37 0.26 16 34 H 0.08 1.22 7.36 -51.93 -0.38 0.84 16 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -31.79 258.22 -7.10 -38.89 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.51 Total: -4.26 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.16 Total: -8.50 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -1.13 Total: -53.09 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.20 Total: 23.06 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.79 -7.10 -38.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306249081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.585 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds