Wall clock time and date at job start Sun Mar 29 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48648 * 110.99972 * 2 1 4 4 C 1.55212 * 103.39641 * 200.98156 * 3 2 1 5 5 C 1.53383 * 102.59580 * 36.38125 * 4 3 2 6 6 C 1.53918 * 111.11034 * 100.27905 * 5 4 3 7 7 C 1.55360 * 101.35389 * 86.09347 * 6 5 4 8 8 N 1.47534 * 104.86262 * 36.06394 * 7 6 5 9 9 C 1.36931 * 125.67338 * 156.01396 * 8 7 6 10 10 H 1.08008 * 120.00116 * 192.91625 * 9 8 7 11 11 C 1.38806 * 120.00071 * 12.91064 * 9 8 7 12 12 N 1.31618 * 120.00448 * 204.41602 * 11 9 8 13 13 Si 1.86803 * 119.99966 * 24.41949 * 11 9 8 14 14 H 1.48501 * 109.47032 * 269.99942 * 13 11 9 15 15 H 1.48501 * 109.46826 * 30.00015 * 13 11 9 16 16 H 1.48495 * 109.47200 * 149.99968 * 13 11 9 17 17 C 1.47337 * 108.65675 * 335.75528 * 8 7 6 18 18 C 1.48256 * 110.99494 * 242.54408 * 2 1 3 19 19 H 1.08997 * 109.47402 * 177.46140 * 1 2 3 20 20 H 1.09005 * 109.47211 * 297.45598 * 1 2 3 21 21 H 1.08999 * 109.47484 * 57.45932 * 1 2 3 22 22 H 1.09009 * 110.63822 * 319.45804 * 3 2 1 23 23 H 1.08999 * 110.63396 * 82.50165 * 3 2 1 24 24 H 1.08994 * 110.78574 * 278.10452 * 4 3 2 25 25 H 1.09001 * 110.79044 * 154.65322 * 4 3 2 26 26 H 1.08998 * 111.02825 * 204.31892 * 6 5 4 27 27 H 1.09008 * 111.02586 * 328.22820 * 6 5 4 28 28 H 1.09002 * 110.48069 * 277.18635 * 7 6 5 29 29 H 1.09005 * 110.31387 * 154.86348 * 7 6 5 30 30 H 0.97005 * 120.00229 * 354.59124 * 12 11 9 31 31 H 1.09003 * 109.97819 * 121.53670 * 17 8 7 32 32 H 1.09004 * 109.97038 * 242.76670 * 17 8 7 33 33 H 1.08997 * 110.04064 * 26.34116 * 18 2 1 34 34 H 1.09000 * 110.07736 * 264.91169 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3877 0.0000 4 6 3.4467 1.2183 -0.5406 5 6 3.2845 0.1078 -1.5862 6 6 3.2191 0.6912 -3.0090 7 6 4.7273 0.7909 -3.3684 8 7 5.3450 -0.3924 -2.7400 9 6 6.5132 -0.9878 -3.1348 10 1 6.7783 -1.9628 -2.7531 11 6 7.3566 -0.3385 -4.0258 12 7 8.1896 -1.0346 -4.7700 13 14 7.3095 1.5235 -4.1685 14 1 6.3205 1.9157 -5.2045 15 1 6.9169 2.1102 -2.8620 16 1 8.6535 2.0247 -4.5523 17 6 4.4993 -0.8232 -1.6131 18 6 2.0002 -0.6382 -1.2282 19 1 -0.3634 -1.0266 -0.0455 20 1 -0.3634 0.4738 0.9120 21 1 -0.3634 0.5528 -0.8663 22 1 1.4156 2.0243 -0.6631 23 1 2.0151 1.7940 1.0113 24 1 4.1230 0.9050 0.2546 25 1 3.7961 2.1398 -1.0063 26 1 2.6960 0.0151 -3.6852 27 1 2.7535 1.6768 -3.0065 28 1 5.1572 1.7050 -2.9590 29 1 4.8615 0.7592 -4.4496 30 1 8.2706 -1.9926 -4.6411 31 1 4.1756 -1.8532 -1.7628 32 1 5.0537 -0.7397 -0.6783 33 1 1.2773 -0.5474 -2.0389 34 1 2.2190 -1.6891 -1.0392 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306249081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:07 Heat of formation + Delta-G solvation = 9.135685 kcal Electronic energy + Delta-G solvation = -14641.608526 eV Core-core repulsion = 12381.003232 eV Total energy + Delta-G solvation = -2260.605294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09114 -37.90668 -34.81756 -32.66528 -30.71242 -30.28552 -27.66067 -25.83436 -24.20101 -22.64021 -22.01113 -20.27217 -19.36574 -17.04790 -16.98441 -16.22207 -15.71464 -15.45789 -15.17600 -15.16251 -14.45543 -13.97984 -13.71190 -13.30696 -12.97490 -12.92627 -12.83099 -12.38215 -12.27824 -12.14231 -11.87088 -11.60458 -11.52007 -11.27404 -11.16283 -10.66454 -9.36165 -9.14460 -8.64225 -5.45444 1.38190 1.52129 1.69085 2.51273 3.04104 3.10490 3.32424 3.56348 3.62905 3.75644 4.09806 4.26285 4.35279 4.42924 4.52142 4.53951 4.68637 4.75230 4.77996 4.84988 4.87664 4.91034 5.03413 5.07740 5.10851 5.19216 5.24159 5.36298 5.55809 5.90414 6.10281 6.13582 6.82508 7.46951 8.13672 8.83520 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060015 B = 0.008955 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.434398 B = 3126.089693 C = 3322.158162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.539 5.539 3 C 0.043 3.957 4 C -0.109 4.109 5 C -0.074 4.074 6 C -0.106 4.106 7 C 0.097 3.903 8 N -0.631 5.631 9 C -0.320 4.320 10 H 0.038 0.962 11 C -0.078 4.078 12 N -0.957 5.957 13 Si 1.108 2.892 14 H -0.270 1.270 15 H -0.266 1.266 16 H -0.304 1.304 17 C 0.147 3.853 18 C 0.059 3.941 19 H 0.070 0.930 20 H 0.080 0.920 21 H 0.034 0.966 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.247 0.753 31 H 0.020 0.980 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.200 7.476 8.513 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.263 5.263 3 C -0.084 4.084 4 C -0.147 4.147 5 C -0.076 4.076 6 C -0.144 4.144 7 C -0.027 4.027 8 N -0.358 5.358 9 C -0.448 4.448 10 H 0.056 0.944 11 C -0.272 4.272 12 N -0.601 5.601 13 Si 0.934 3.066 14 H -0.196 1.196 15 H -0.192 1.192 16 H -0.233 1.233 17 C 0.022 3.978 18 C -0.069 4.069 19 H 0.088 0.912 20 H 0.099 0.901 21 H 0.053 0.947 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.386 8.391 8.158 20.137 hybrid contribution -0.112 -1.735 0.000 1.738 sum -16.499 6.656 8.158 19.572 Atomic orbital electron populations 1.22559 0.86534 1.02462 1.01656 1.64845 1.09412 1.15620 1.36443 1.23311 0.93785 0.89542 1.01755 1.22436 0.97483 0.97646 0.97101 1.21466 0.94193 0.95884 0.96009 1.22740 0.94516 1.02062 0.95080 1.22263 0.94001 0.89804 0.96636 1.45026 1.23586 1.33591 1.33608 1.19949 0.98364 0.99432 1.27101 0.94384 1.27191 0.95127 1.10100 0.94739 1.71024 1.44396 1.08139 1.36511 0.83300 0.75200 0.71017 0.77121 1.19572 1.19162 1.23256 1.21413 0.90859 0.95934 0.89566 1.22674 0.94134 0.98660 0.91476 0.91151 0.90132 0.94719 0.92285 0.88883 0.91749 0.90373 0.90870 0.88085 0.94564 0.94122 0.94399 0.96221 0.96248 0.92165 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.40 127.69 1.20 1.48 16 2 N -0.54 -12.55 5.57 -909.75 -5.07 -17.62 16 3 C 0.04 0.91 6.59 86.72 0.57 1.49 16 4 C -0.11 -2.95 6.04 31.48 0.19 -2.76 16 5 C -0.07 -2.32 0.74 -51.79 -0.04 -2.36 16 6 C -0.11 -3.31 5.75 31.72 0.18 -3.13 16 7 C 0.10 4.12 4.60 86.99 0.40 4.52 16 8 N -0.63 -31.93 3.28 -692.43 -2.27 -34.20 16 9 C -0.32 -19.41 10.45 84.03 0.88 -18.53 16 10 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 11 C -0.08 -4.79 5.42 84.86 0.46 -4.33 16 12 N -0.96 -63.06 13.70 21.65 0.30 -62.76 16 13 Si 1.11 54.68 24.69 68.60 1.69 56.38 16 14 H -0.27 -12.15 6.62 99.48 0.66 -11.49 16 15 H -0.27 -12.08 6.21 99.48 0.62 -11.46 16 16 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 17 C 0.15 6.19 6.45 86.24 0.56 6.74 16 18 C 0.06 1.55 6.05 85.97 0.52 2.07 16 19 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 20 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 21 H 0.03 0.55 8.01 -2.39 -0.02 0.53 16 22 H 0.06 1.07 7.95 -2.38 -0.02 1.06 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 24 H 0.06 1.91 7.49 -2.39 -0.02 1.89 16 25 H 0.08 2.04 7.77 -2.39 -0.02 2.02 16 26 H 0.07 2.24 7.92 -2.39 -0.02 2.22 16 27 H 0.10 2.48 7.94 -2.38 -0.02 2.46 16 28 H 0.04 1.52 5.55 -2.39 -0.01 1.51 16 29 H 0.04 1.86 6.25 -2.38 -0.01 1.84 16 30 H 0.25 16.39 8.73 -92.70 -0.81 15.58 16 31 H 0.02 0.85 7.46 -2.39 -0.02 0.84 16 32 H 0.02 0.85 7.43 -2.38 -0.02 0.83 16 33 H 0.06 1.43 7.21 -2.39 -0.02 1.41 16 34 H 0.07 2.00 7.36 -2.39 -0.02 1.98 16 Total: -1.00 -70.26 258.22 0.46 -69.80 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 0.88 Total: 3.22 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.92 Total: -14.82 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -7.04 Total: -114.57 kcal Atomic # 14 Polarization: 54.68 SS G_CDS: 1.69 Total: 56.38 kcal Total: -70.26 0.46 -69.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306249081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.935 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds