Wall clock time and date at job start Sun Mar 29 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86804 * 119.99468 * 2 1 4 4 H 1.48503 * 109.47168 * 269.99658 * 3 2 1 5 5 H 1.48492 * 109.47447 * 30.00276 * 3 2 1 6 6 H 1.48501 * 109.46812 * 149.99853 * 3 2 1 7 7 C 1.38744 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00253 * 179.97438 * 7 2 1 9 9 O 1.34921 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00650 * 180.02562 * 9 7 2 11 11 O 1.21208 * 119.99565 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00399 * 180.02562 * 10 9 7 13 13 C 1.55925 * 115.92387 * 61.01226 * 12 10 9 14 14 C 1.54578 * 104.64248 * 160.03326 * 13 12 10 15 15 C 1.55924 * 104.64885 * 359.97438 * 14 13 12 16 16 C 1.55931 * 104.49651 * 71.08516 * 15 14 13 17 17 C 1.55932 * 115.92035 * 297.93886 * 12 10 9 18 18 C 1.56954 * 100.64927 * 326.22065 * 15 14 13 19 19 H 0.97003 * 120.00248 * 0.02562 * 1 2 3 20 20 H 1.09000 * 110.40429 * 41.24134 * 13 12 10 21 21 H 1.09003 * 110.40385 * 278.82009 * 13 12 10 22 22 H 1.09005 * 110.40389 * 241.20468 * 14 13 12 23 23 H 1.09000 * 110.50316 * 118.84427 * 14 13 12 24 24 H 1.09002 * 115.92368 * 199.96913 * 15 14 13 25 25 H 1.08999 * 110.40040 * 47.71052 * 16 15 14 26 26 H 1.09000 * 110.39864 * 170.12808 * 16 15 14 27 27 H 1.09000 * 110.39671 * 317.94873 * 17 12 10 28 28 H 1.08992 * 110.40230 * 80.25182 * 17 12 10 29 29 H 1.08997 * 112.02730 * 171.06652 * 18 15 14 30 30 H 1.08998 * 112.02508 * 297.59571 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2015 0.0005 8 1 3.0882 -1.2015 0.0001 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0020 12 6 1.3811 -4.8392 0.0011 13 6 0.4675 -5.1383 -1.2266 14 6 0.3277 -6.6776 -1.2438 15 6 1.1705 -7.1638 -0.0253 16 6 0.3426 -6.7262 1.2215 17 6 0.4848 -5.1480 1.2391 18 6 2.3212 -6.0963 -0.0242 19 1 -0.4851 0.8401 -0.0004 20 1 0.9391 -4.7893 -2.1452 21 1 -0.5081 -4.6696 -1.0974 22 1 0.7306 -7.0855 -2.1709 23 1 -0.7162 -6.9676 -1.1241 24 1 1.4823 -8.2080 -0.0478 25 1 -0.7031 -7.0096 1.1017 26 1 0.7562 -7.1700 2.1270 27 1 0.9757 -4.8190 2.1550 28 1 -0.4866 -4.6648 1.1349 29 1 2.9474 -6.1712 0.8648 30 1 2.9124 -6.1316 -0.9392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306275200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:05 Heat of formation + Delta-G solvation = -86.825624 kcal Electronic energy + Delta-G solvation = -14174.317985 eV Core-core repulsion = 11741.425651 eV Total energy + Delta-G solvation = -2432.892334 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.08012 -38.22911 -34.98558 -32.09610 -30.01320 -29.54618 -27.35550 -25.34803 -21.94708 -21.89389 -19.21365 -18.52045 -17.60393 -16.51671 -15.14415 -15.09500 -14.70164 -14.31264 -13.95948 -13.26801 -12.27964 -12.24774 -11.92266 -11.46816 -11.37440 -11.24345 -10.99251 -10.75438 -10.71312 -10.57236 -10.42082 -10.32421 -10.12762 -9.67687 -9.65552 -8.87746 -8.53317 -6.36817 -4.04274 3.13400 3.21029 3.27230 3.54400 3.97379 4.51581 4.69981 4.79038 4.87235 5.17360 5.37201 5.42637 5.56321 5.63190 5.70898 5.73036 5.96376 6.03424 6.12534 6.25140 6.27082 6.37098 6.46757 6.51969 6.54767 6.62954 6.97885 7.44393 8.00299 8.77581 9.12325 9.94147 10.81335 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.058994 B = 0.008333 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.512439 B = 3359.362196 C = 3497.786854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.382 4.382 8 H 0.094 0.906 9 O -0.210 6.210 10 C 0.426 3.574 11 O -0.555 6.555 12 C -0.063 4.063 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.105 4.105 18 C -0.095 4.095 19 H 0.268 0.732 20 H 0.064 0.936 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -11.101 0.002 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.117 6.117 10 C 0.272 3.728 11 O -0.452 6.452 12 C -0.064 4.064 13 C -0.144 4.144 14 C -0.155 4.155 15 C -0.127 4.127 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.132 4.132 19 H 0.078 0.922 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.193 -10.897 0.004 10.962 hybrid contribution 0.399 0.930 -0.026 1.012 sum -0.794 -9.967 -0.022 9.999 Atomic orbital electron populations 1.69998 1.05950 1.27539 1.46771 1.25311 0.95795 0.98777 0.96302 0.85702 0.79071 0.79897 0.78702 1.19918 1.20343 1.19136 1.21224 0.92354 0.80028 1.52254 0.88836 1.83886 1.39256 1.13190 1.75348 1.22325 0.86088 0.86192 0.78205 1.90539 1.15677 1.88003 1.51003 1.22263 0.95970 0.90339 0.97839 1.22536 0.99647 0.95239 0.96976 1.22630 0.99594 0.95511 0.97791 1.23561 0.95757 0.97994 0.95383 1.23265 0.99504 0.95246 0.97467 1.23193 0.99617 0.94784 0.96691 1.23326 0.95835 0.91893 1.02167 0.92174 0.91672 0.90677 0.91995 0.91684 0.88511 0.91667 0.91838 0.91667 0.90550 0.90903 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.67 55.48 0.76 -24.96 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.38 -11.61 9.64 30.92 0.30 -11.31 16 8 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.21 -6.19 9.75 -20.70 -0.20 -6.39 16 10 C 0.43 11.03 7.28 36.00 0.26 11.29 16 11 O -0.56 -15.64 15.74 -19.05 -0.30 -15.94 16 12 C -0.06 -1.23 1.38 -150.37 -0.21 -1.44 16 13 C -0.11 -1.82 5.86 -24.34 -0.14 -1.96 16 14 C -0.12 -1.54 6.20 -24.34 -0.15 -1.69 16 15 C -0.11 -1.40 5.14 -85.35 -0.44 -1.83 16 16 C -0.12 -1.52 6.41 -22.14 -0.14 -1.67 16 17 C -0.11 -1.79 6.06 -22.14 -0.13 -1.93 16 18 C -0.09 -1.56 5.68 -22.42 -0.13 -1.68 16 19 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 20 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 21 H 0.07 1.30 7.82 -51.93 -0.41 0.90 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.76 7.81 -51.93 -0.41 0.35 16 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.76 7.81 -51.93 -0.41 0.35 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.33 7.82 -51.93 -0.41 0.92 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 252.59 15.07 3.81 3.81 Total: -1.00 -32.90 252.59 -5.92 -38.82 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.08 Total: -0.91 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.88 Total: -11.11 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.76 Total: -24.96 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.50 Total: -22.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.90 -5.92 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306275200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.008 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds