Wall clock time and date at job start Sun Mar 29 2020 21:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86804 * 119.99468 * 2 1 4 4 H 1.48503 * 109.47168 * 269.99658 * 3 2 1 5 5 H 1.48492 * 109.47447 * 30.00276 * 3 2 1 6 6 H 1.48501 * 109.46812 * 149.99853 * 3 2 1 7 7 C 1.38744 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00253 * 179.97438 * 7 2 1 9 9 O 1.34921 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00650 * 180.02562 * 9 7 2 11 11 O 1.21208 * 119.99565 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00399 * 180.02562 * 10 9 7 13 13 C 1.55925 * 115.92387 * 61.01226 * 12 10 9 14 14 C 1.54578 * 104.64248 * 160.03326 * 13 12 10 15 15 C 1.55924 * 104.64885 * 359.97438 * 14 13 12 16 16 C 1.55931 * 104.49651 * 71.08516 * 15 14 13 17 17 C 1.55932 * 115.92035 * 297.93886 * 12 10 9 18 18 C 1.56954 * 100.64927 * 326.22065 * 15 14 13 19 19 H 0.97003 * 120.00248 * 0.02562 * 1 2 3 20 20 H 1.09000 * 110.40429 * 41.24134 * 13 12 10 21 21 H 1.09003 * 110.40385 * 278.82009 * 13 12 10 22 22 H 1.09005 * 110.40389 * 241.20468 * 14 13 12 23 23 H 1.09000 * 110.50316 * 118.84427 * 14 13 12 24 24 H 1.09002 * 115.92368 * 199.96913 * 15 14 13 25 25 H 1.08999 * 110.40040 * 47.71052 * 16 15 14 26 26 H 1.09000 * 110.39864 * 170.12808 * 16 15 14 27 27 H 1.09000 * 110.39671 * 317.94873 * 17 12 10 28 28 H 1.08992 * 110.40230 * 80.25182 * 17 12 10 29 29 H 1.08997 * 112.02730 * 171.06652 * 18 15 14 30 30 H 1.08998 * 112.02508 * 297.59571 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2015 0.0005 8 1 3.0882 -1.2015 0.0001 9 8 1.3337 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0020 12 6 1.3811 -4.8392 0.0011 13 6 0.4675 -5.1383 -1.2266 14 6 0.3277 -6.6776 -1.2438 15 6 1.1705 -7.1638 -0.0253 16 6 0.3426 -6.7262 1.2215 17 6 0.4848 -5.1480 1.2391 18 6 2.3212 -6.0963 -0.0242 19 1 -0.4851 0.8401 -0.0004 20 1 0.9391 -4.7893 -2.1452 21 1 -0.5081 -4.6696 -1.0974 22 1 0.7306 -7.0855 -2.1709 23 1 -0.7162 -6.9676 -1.1241 24 1 1.4823 -8.2080 -0.0478 25 1 -0.7031 -7.0096 1.1017 26 1 0.7562 -7.1700 2.1270 27 1 0.9757 -4.8190 2.1550 28 1 -0.4866 -4.6648 1.1349 29 1 2.9474 -6.1712 0.8648 30 1 2.9124 -6.1316 -0.9392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306275200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:04 Heat of formation + Delta-G solvation = -107.282367 kcal Electronic energy + Delta-G solvation = -14175.205056 eV Core-core repulsion = 11741.425651 eV Total energy + Delta-G solvation = -2433.779405 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.65696 -40.09544 -37.18127 -34.34094 -31.22004 -30.94697 -28.63906 -27.53923 -23.78805 -23.12525 -20.47798 -20.24023 -19.80845 -18.17345 -17.13968 -16.75314 -16.26450 -15.90193 -15.71995 -15.12267 -13.85395 -13.63190 -13.50003 -13.23134 -13.14538 -12.65475 -12.47812 -12.26604 -12.15865 -12.10980 -11.98719 -11.83731 -11.79254 -11.31362 -10.90966 -10.88484 -10.73205 -8.57677 -6.38290 1.25673 1.30442 1.48159 1.58381 2.08964 2.73041 2.92036 3.38936 3.55166 3.59013 4.17980 4.23485 4.28524 4.43258 4.52275 4.54501 4.57535 4.80096 4.81361 4.99880 5.06574 5.09331 5.15147 5.20917 5.24003 5.32781 5.38037 5.49638 5.79307 6.61132 6.86884 7.74890 8.63052 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.058994 B = 0.008333 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.512439 B = 3359.362196 C = 3497.786854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.003 4.003 3 Si 1.018 2.982 4 H -0.259 1.259 5 H -0.256 1.256 6 H -0.265 1.265 7 C -0.427 4.427 8 H 0.078 0.922 9 O -0.238 6.238 10 C 0.418 3.582 11 O -0.587 6.587 12 C -0.086 4.086 13 C -0.106 4.106 14 C -0.108 4.108 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.096 4.096 19 H 0.280 0.720 20 H 0.046 0.954 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.139 0.861 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -12.652 -0.011 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.203 4.203 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.180 1.180 6 H -0.189 1.189 7 C -0.503 4.503 8 H 0.095 0.905 9 O -0.146 6.146 10 C 0.267 3.733 11 O -0.485 6.485 12 C -0.087 4.087 13 C -0.144 4.144 14 C -0.145 4.145 15 C -0.103 4.103 16 C -0.142 4.142 17 C -0.146 4.146 18 C -0.134 4.134 19 H 0.089 0.911 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.157 0.843 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.777 -12.476 -0.012 12.602 hybrid contribution 0.589 1.404 -0.021 1.523 sum -1.189 -11.072 -0.033 11.136 Atomic orbital electron populations 1.70079 1.07613 1.29419 1.46622 1.26559 0.96935 1.02304 0.94529 0.84635 0.77666 0.74449 0.79636 1.18313 1.18031 1.18919 1.21432 0.92091 0.81450 1.55296 0.90469 1.83914 1.40235 1.14081 1.76400 1.23767 0.86193 0.87560 0.75803 1.90483 1.17270 1.88686 1.52074 1.22530 0.97964 0.87570 1.00639 1.22572 0.98066 0.99029 0.94768 1.22636 1.01477 0.91397 0.99006 1.23642 0.93151 0.98732 0.94818 1.23271 1.01387 0.90863 0.98640 1.23242 0.98026 0.98827 0.94476 1.23407 0.96682 0.91604 1.01698 0.91107 0.93471 0.91727 0.90159 0.89119 0.84336 0.89111 0.89864 0.93392 0.91641 0.91393 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.62 13.67 21.62 0.30 -54.32 16 2 C 0.00 -0.17 5.49 84.87 0.47 0.30 16 3 Si 1.02 44.81 29.55 68.60 2.03 46.83 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.43 -27.25 9.64 67.94 0.66 -26.60 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.24 -14.92 9.75 14.87 0.14 -14.78 16 10 C 0.42 22.93 7.28 71.23 0.52 23.44 16 11 O -0.59 -34.93 15.74 20.78 0.33 -34.60 16 12 C -0.09 -3.43 1.38 -49.50 -0.07 -3.50 16 13 C -0.11 -3.63 5.86 32.14 0.19 -3.44 16 14 C -0.11 -2.43 6.20 32.14 0.20 -2.23 16 15 C -0.09 -1.83 5.14 -7.38 -0.04 -1.86 16 16 C -0.10 -2.31 6.41 33.57 0.22 -2.10 16 17 C -0.11 -3.66 6.06 33.57 0.20 -3.46 16 18 C -0.10 -3.06 5.68 33.38 0.19 -2.87 16 19 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 20 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 2.28 7.82 -2.39 -0.02 2.26 16 22 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 23 H 0.09 1.66 7.81 -2.39 -0.02 1.64 16 24 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.09 1.64 7.81 -2.39 -0.02 1.62 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.31 7.82 -2.39 -0.02 2.29 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -75.91 252.59 6.44 -69.47 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.12 Total: 9.71 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 2.53 Total: -22.31 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.30 Total: -54.32 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: 0.47 Total: -49.38 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -75.91 6.44 -69.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306275200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.813 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds