Wall clock time and date at job start Sun Mar 29 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29945 * 125.30365 * 2 1 4 4 O 1.41881 * 107.41103 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.38835 * 359.78408 * 4 3 2 6 6 C 1.29957 * 107.41210 * 0.36471 * 5 4 3 7 7 C 1.50699 * 125.29973 * 179.89671 * 6 5 4 8 8 N 1.46499 * 109.46700 * 269.69016 * 7 6 5 9 9 C 1.34784 * 119.99893 * 180.02562 * 8 7 6 10 10 O 1.21682 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.46368 * 119.99916 * 179.72943 * 9 8 7 12 12 H 1.07998 * 120.00437 * 359.97438 * 11 9 8 13 13 C 1.40055 * 119.99853 * 179.97438 * 11 9 8 14 14 N 1.30662 * 119.99894 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99877 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46909 * 89.99994 * 15 13 11 17 17 H 1.48496 * 109.47072 * 210.00005 * 15 13 11 18 18 H 1.48500 * 109.46867 * 330.00008 * 15 13 11 19 19 H 1.09004 * 109.46940 * 270.00280 * 1 2 3 20 20 H 1.08995 * 109.47105 * 29.99575 * 1 2 3 21 21 H 1.08998 * 109.47477 * 150.00135 * 1 2 3 22 22 H 1.08998 * 109.46743 * 149.69492 * 7 6 5 23 23 H 1.08994 * 109.47542 * 29.69351 * 7 6 5 24 24 H 0.97005 * 120.00261 * 0.02562 * 8 7 6 25 25 H 0.97000 * 120.00244 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5709 -0.7937 0.0061 6 6 2.3212 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0013 8 7 1.6587 -3.0326 -1.3798 9 6 1.2182 -4.2825 -1.6255 10 8 0.9557 -5.0280 -0.7003 11 6 1.0506 -4.7414 -3.0053 12 1 1.2794 -4.0783 -3.8265 13 6 0.5934 -6.0403 -3.2606 14 7 0.3170 -6.8427 -2.2671 15 14 0.3788 -6.6256 -5.0216 16 1 1.6430 -7.2443 -5.4951 17 1 -0.7152 -7.6281 -5.0801 18 1 0.0380 -5.4697 -5.8893 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3634 -0.8900 -0.5138 22 1 0.8607 -2.6183 0.5151 23 1 2.5396 -3.2094 0.5154 24 1 1.8683 -2.4385 -2.1173 25 1 0.0001 -7.7423 -2.4439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306290098.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:53 Heat of formation + Delta-G solvation = 46.425027 kcal Electronic energy + Delta-G solvation = -13325.677889 eV Core-core repulsion = 10729.597482 eV Total energy + Delta-G solvation = -2596.080407 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.41895 -37.51204 -34.75584 -33.66493 -32.61829 -31.80650 -28.77354 -27.60882 -25.50112 -22.22774 -20.70686 -19.88943 -17.66450 -16.58469 -16.06876 -15.43648 -14.80027 -14.48805 -14.16298 -13.76215 -13.44385 -13.21971 -12.76870 -12.38566 -11.84035 -11.70069 -11.44647 -11.29109 -11.00096 -10.82780 -10.61752 -10.56667 -10.30834 -8.95586 -7.81828 -7.80745 -6.30865 -4.77063 0.54991 1.95156 2.72182 3.08966 3.16232 3.18431 3.20055 3.89704 4.03822 4.45479 4.69516 4.81652 4.99070 5.27298 5.30254 5.45924 5.63568 5.81692 5.98725 6.06334 6.99214 7.33084 7.65037 7.82376 8.17272 8.90841 9.28807 10.43707 10.62194 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.054045 B = 0.006794 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.958839 B = 4120.559038 C = 4164.697338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.088 3.912 3 N -0.287 5.287 4 O 0.017 5.983 5 N -0.261 5.261 6 C 0.072 3.928 7 C 0.195 3.805 8 N -0.762 5.762 9 C 0.556 3.444 10 O -0.576 6.576 11 C -0.542 4.542 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.765 5.765 15 Si 0.910 3.090 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.264 1.264 19 H 0.096 0.904 20 H 0.088 0.912 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.383 0.617 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 9.666 1.643 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 N -0.033 5.033 4 O -0.123 6.123 5 N -0.006 5.006 6 C -0.111 4.111 7 C 0.069 3.931 8 N -0.421 5.421 9 C 0.361 3.639 10 O -0.458 6.458 11 C -0.579 4.579 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.393 5.393 15 Si 0.735 3.265 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.188 1.188 19 H 0.114 0.886 20 H 0.107 0.893 21 H 0.121 0.879 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.215 0.785 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.347 9.753 2.428 10.056 hybrid contribution -0.442 -0.341 -1.180 1.306 sum -0.789 9.411 1.248 9.526 Atomic orbital electron populations 1.20630 0.84044 1.05753 1.04848 1.24649 1.00483 0.88836 0.95490 1.79881 0.89196 1.19749 1.14522 1.93367 1.20292 1.14051 1.84618 1.80013 1.17819 0.90721 1.12004 1.24998 0.89613 0.99871 0.96634 1.19527 1.00968 0.83122 0.89481 1.46257 1.75243 1.17197 1.03360 1.18271 0.76675 0.78138 0.90787 1.90622 1.54931 1.53924 1.46314 1.20837 1.47491 0.98907 0.90623 0.91231 1.25704 0.92977 0.96198 0.98353 1.69998 1.31257 1.06136 1.31955 0.86328 0.78493 0.79030 0.82688 1.19668 1.20364 1.18842 0.88564 0.89334 0.87903 0.89584 0.90229 0.78515 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.05 36.01 0.36 -0.55 15 2 C 0.09 1.19 7.19 -82.38 -0.59 0.59 15 3 N -0.29 -4.34 12.98 33.74 0.44 -3.90 15 4 O 0.02 0.28 13.71 12.02 0.16 0.45 15 5 N -0.26 -4.47 12.98 33.74 0.44 -4.03 15 6 C 0.07 1.12 6.55 -82.38 -0.54 0.58 15 7 C 0.20 3.40 5.84 -5.19 -0.03 3.37 15 8 N -0.76 -15.74 5.54 -62.91 -0.35 -16.09 15 9 C 0.56 14.82 7.75 -12.99 -0.10 14.72 15 10 O -0.58 -17.48 15.02 5.20 0.08 -17.40 15 11 C -0.54 -14.55 9.54 -35.63 -0.34 -14.89 15 12 H 0.07 1.71 7.85 -52.49 -0.41 1.30 15 13 C 0.09 2.35 5.50 -17.37 -0.10 2.26 15 14 N -0.77 -21.97 11.83 55.55 0.66 -21.31 15 15 Si 0.91 19.35 29.56 -169.99 -5.02 14.33 15 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 19 H 0.10 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.09 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.10 1.03 7.78 -51.93 -0.40 0.63 15 22 H 0.09 1.39 7.77 -51.93 -0.40 0.99 15 23 H 0.08 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.38 7.19 8.44 -40.82 -0.34 6.84 15 25 H 0.27 7.04 8.29 -40.82 -0.34 6.70 15 LS Contribution 239.92 15.07 3.62 3.62 Total: -1.00 -32.56 239.92 -3.28 -35.84 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -1.97 Total: 2.43 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.34 Total: 6.08 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 1.18 Total: -45.34 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.24 Total: -16.96 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.56 -3.28 -35.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306290098.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.265 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds