Wall clock time and date at job start Sun Mar 29 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29945 * 125.30365 * 2 1 4 4 O 1.41881 * 107.41103 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.38835 * 359.78408 * 4 3 2 6 6 C 1.29957 * 107.41210 * 0.36471 * 5 4 3 7 7 C 1.50699 * 125.29973 * 179.89671 * 6 5 4 8 8 N 1.46499 * 109.46700 * 269.69016 * 7 6 5 9 9 C 1.34784 * 119.99893 * 180.02562 * 8 7 6 10 10 O 1.21682 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.46368 * 119.99916 * 179.72943 * 9 8 7 12 12 H 1.07998 * 120.00437 * 359.97438 * 11 9 8 13 13 C 1.40055 * 119.99853 * 179.97438 * 11 9 8 14 14 N 1.30662 * 119.99894 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99877 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46909 * 89.99994 * 15 13 11 17 17 H 1.48496 * 109.47072 * 210.00005 * 15 13 11 18 18 H 1.48500 * 109.46867 * 330.00008 * 15 13 11 19 19 H 1.09004 * 109.46940 * 270.00280 * 1 2 3 20 20 H 1.08995 * 109.47105 * 29.99575 * 1 2 3 21 21 H 1.08998 * 109.47477 * 150.00135 * 1 2 3 22 22 H 1.08998 * 109.46743 * 149.69492 * 7 6 5 23 23 H 1.08994 * 109.47542 * 29.69351 * 7 6 5 24 24 H 0.97005 * 120.00261 * 0.02562 * 8 7 6 25 25 H 0.97000 * 120.00244 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5709 -0.7937 0.0061 6 6 2.3212 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0013 8 7 1.6587 -3.0326 -1.3798 9 6 1.2182 -4.2825 -1.6255 10 8 0.9557 -5.0280 -0.7003 11 6 1.0506 -4.7414 -3.0053 12 1 1.2794 -4.0783 -3.8265 13 6 0.5934 -6.0403 -3.2606 14 7 0.3170 -6.8427 -2.2671 15 14 0.3788 -6.6256 -5.0216 16 1 1.6430 -7.2443 -5.4951 17 1 -0.7152 -7.6281 -5.0801 18 1 0.0380 -5.4697 -5.8893 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3634 -0.8900 -0.5138 22 1 0.8607 -2.6183 0.5151 23 1 2.5396 -3.2094 0.5154 24 1 1.8683 -2.4385 -2.1173 25 1 0.0001 -7.7423 -2.4439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306290098.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:53 Heat of formation + Delta-G solvation = 21.029934 kcal Electronic energy + Delta-G solvation = -13326.779103 eV Core-core repulsion = 10729.597482 eV Total energy + Delta-G solvation = -2597.181621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.65303 -39.44455 -36.25950 -34.98311 -34.54635 -33.43760 -29.77440 -29.33263 -27.28368 -23.48985 -22.09094 -21.65213 -19.46305 -17.94053 -17.52855 -17.22115 -16.36409 -15.96221 -15.78013 -15.12272 -14.79483 -14.29317 -14.24949 -13.81856 -13.37653 -13.15753 -12.93253 -12.76578 -12.67091 -12.57402 -12.16009 -11.99355 -11.70565 -10.92488 -9.92607 -9.65479 -8.30159 -6.86211 -0.68352 0.76297 1.43809 1.43931 1.45978 1.59732 1.97322 2.26416 2.46051 2.69487 3.10897 3.56756 3.58832 3.89177 4.14843 4.46605 4.54928 4.61899 4.72502 5.10775 5.33521 5.76806 5.82204 5.98927 6.20679 6.87323 7.39892 8.43063 8.64685 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.054045 B = 0.006794 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.958839 B = 4120.559038 C = 4164.697338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.104 3.896 3 N -0.294 5.294 4 O -0.002 6.002 5 N -0.281 5.281 6 C 0.080 3.920 7 C 0.201 3.799 8 N -0.749 5.749 9 C 0.546 3.454 10 O -0.622 6.622 11 C -0.570 4.570 12 H 0.087 0.913 13 C 0.034 3.966 14 N -0.816 5.816 15 Si 0.994 3.006 16 H -0.266 1.266 17 H -0.272 1.272 18 H -0.249 1.249 19 H 0.123 0.877 20 H 0.108 0.892 21 H 0.100 0.900 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.394 0.606 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 10.497 0.443 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 N -0.043 5.043 4 O -0.139 6.139 5 N -0.026 5.026 6 C -0.104 4.104 7 C 0.075 3.925 8 N -0.406 5.406 9 C 0.351 3.649 10 O -0.508 6.508 11 C -0.606 4.606 12 H 0.105 0.895 13 C -0.182 4.182 14 N -0.446 5.446 15 Si 0.814 3.186 16 H -0.191 1.191 17 H -0.197 1.197 18 H -0.172 1.172 19 H 0.141 0.859 20 H 0.126 0.874 21 H 0.119 0.881 22 H 0.122 0.878 23 H 0.083 0.917 24 H 0.228 0.772 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.135 10.646 1.226 10.776 hybrid contribution -0.186 -0.542 -0.742 0.938 sum -1.321 10.104 0.484 10.201 Atomic orbital electron populations 1.20870 0.80975 1.06592 1.06760 1.25126 1.01983 0.87321 0.93394 1.79910 0.88388 1.20038 1.15999 1.93360 1.21755 1.13502 1.85257 1.79984 1.18785 0.91383 1.12416 1.24787 0.89713 0.99409 0.96445 1.19492 1.01596 0.83878 0.87530 1.45798 1.73791 1.15809 1.05238 1.18491 0.76492 0.79305 0.90615 1.90585 1.56955 1.55772 1.47468 1.21377 1.47868 0.99947 0.91415 0.89475 1.26870 0.91835 0.96044 1.03477 1.70144 1.32468 1.06877 1.35083 0.85059 0.78598 0.78792 0.76139 1.19084 1.19725 1.17233 0.85937 0.87356 0.88088 0.87831 0.91698 0.77218 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 10.05 71.24 0.72 -0.80 15 2 C 0.10 2.59 7.19 43.49 0.31 2.90 15 3 N -0.29 -8.41 12.98 -47.16 -0.61 -9.02 15 4 O 0.00 -0.07 13.71 70.15 0.96 0.89 15 5 N -0.28 -9.45 12.98 -47.16 -0.61 -10.07 15 6 C 0.08 2.39 6.55 43.49 0.29 2.68 15 7 C 0.20 6.84 5.84 85.63 0.50 7.34 15 8 N -0.75 -30.49 5.54 -471.16 -2.61 -33.11 15 9 C 0.55 29.21 7.75 86.36 0.67 29.88 15 10 O -0.62 -38.46 15.02 -4.29 -0.06 -38.53 15 11 C -0.57 -30.34 9.54 24.83 0.24 -30.11 15 12 H 0.09 4.17 7.85 -2.91 -0.02 4.15 15 13 C 0.03 1.78 5.50 85.31 0.47 2.25 15 14 N -0.82 -47.45 11.83 21.84 0.26 -47.19 15 15 Si 0.99 38.96 29.56 68.60 2.03 40.99 15 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 17 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 18 H -0.25 -9.05 7.11 99.48 0.71 -8.35 15 19 H 0.12 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.10 1.74 7.78 -2.39 -0.02 1.72 15 22 H 0.10 3.22 7.77 -2.39 -0.02 3.20 15 23 H 0.06 2.44 8.14 -2.39 -0.02 2.43 15 24 H 0.39 14.34 8.44 -92.70 -0.78 13.55 15 25 H 0.28 14.53 8.29 -92.71 -0.77 13.77 15 Total: -1.00 -70.65 239.92 2.99 -67.67 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.45 Total: 14.21 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 3.19 Total: 14.15 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.58 Total: -99.38 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: 0.90 Total: -37.64 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -70.65 2.99 -67.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306290098.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.697 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds