Wall clock time and date at job start Sun Mar 29 2020 21:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47413 * 2 1 4 4 C 1.53003 * 109.47296 * 239.99813 * 2 1 3 5 5 C 1.50706 * 109.47240 * 119.99569 * 2 1 3 6 6 N 1.31068 * 126.66446 * 246.06441 * 5 2 1 7 7 N 1.28831 * 107.99232 * 180.02562 * 6 5 2 8 8 N 1.28740 * 109.39908 * 359.73381 * 7 6 5 9 9 N 1.29020 * 108.80672 * 0.43609 * 8 7 6 10 10 C 1.46502 * 126.44008 * 179.83316 * 9 8 7 11 11 C 1.50702 * 109.47086 * 275.91470 * 10 9 8 12 12 H 1.08000 * 120.00163 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00041 * 180.02562 * 11 10 9 14 14 N 1.31524 * 119.99973 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00257 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47493 * 59.99449 * 15 13 11 17 17 H 1.48501 * 109.47079 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46748 * 299.99180 * 15 13 11 19 19 H 1.09001 * 109.47200 * 305.29592 * 1 2 3 20 20 H 1.09007 * 109.47198 * 65.29221 * 1 2 3 21 21 H 1.08998 * 109.47550 * 185.29587 * 1 2 3 22 22 H 1.08995 * 109.47431 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.46734 * 299.99718 * 3 2 1 24 24 H 1.09001 * 109.47000 * 59.99439 * 3 2 1 25 25 H 1.08995 * 109.46643 * 299.99884 * 4 2 1 26 26 H 1.08998 * 109.47024 * 60.00423 * 4 2 1 27 27 H 1.09000 * 109.46759 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.46832 * 35.90808 * 10 9 8 29 29 H 1.08997 * 109.47075 * 155.90852 * 10 9 8 30 30 H 0.96994 * 119.99787 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.6953 -0.1759 2.2269 7 7 2.9449 -1.1057 3.0830 8 7 2.4534 -2.2183 2.6614 9 7 1.8876 -2.0170 1.5195 10 6 1.2096 -3.0206 0.6952 11 6 2.2263 -3.7532 -0.1418 12 1 3.2728 -3.4966 -0.0676 13 6 1.8205 -4.7503 -1.0032 14 7 0.5460 -5.0624 -1.0940 15 14 3.0807 -5.6590 -2.0402 16 1 4.0621 -6.3306 -1.1508 17 1 2.3934 -6.6762 -2.8758 18 1 3.7885 -4.6927 -2.9181 19 1 -0.3634 0.5938 0.8388 20 1 -0.3634 0.4296 -0.9336 21 1 -0.3634 -1.0232 0.0948 22 1 3.1299 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6766 -1.7489 -1.2491 26 1 1.6767 -0.2075 -2.1392 27 1 3.1300 -0.7208 -1.2494 28 1 0.6908 -3.7299 1.3400 29 1 0.4887 -2.5280 0.0428 30 1 0.2606 -5.7642 -1.6997 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306326272.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:49 Heat of formation + Delta-G solvation = 74.532917 kcal Electronic energy + Delta-G solvation = -14412.045148 eV Core-core repulsion = 12050.735347 eV Total energy + Delta-G solvation = -2361.309801 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.05502 -38.35073 -36.69692 -34.73811 -32.48679 -30.21997 -28.27072 -28.07633 -26.09206 -24.65175 -23.49795 -20.80458 -19.09990 -18.02798 -17.50784 -16.57791 -16.27555 -15.46088 -15.01023 -14.54085 -14.04432 -14.01859 -13.51459 -13.26312 -13.07575 -12.92819 -12.74802 -12.57369 -12.55472 -12.40917 -12.23840 -12.04720 -11.88591 -11.55686 -11.34781 -10.81611 -10.76188 -8.42305 -6.56661 0.46959 1.26470 1.38584 1.40036 1.43522 1.52351 2.31432 2.92352 3.04022 3.51282 3.94785 3.99849 4.15388 4.41862 4.56243 4.64523 4.79643 4.82372 4.89036 4.99780 5.02002 5.07349 5.13421 5.28227 5.39222 5.41163 5.54794 5.59022 5.65873 6.46610 7.13176 7.71876 8.66466 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.033173 B = 0.011460 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.852678 B = 2442.732972 C = 2775.895458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.018 3.982 3 C -0.123 4.123 4 C -0.155 4.155 5 C 0.190 3.810 6 N -0.331 5.331 7 N -0.123 5.123 8 N -0.127 5.127 9 N -0.275 5.275 10 C 0.248 3.752 11 C -0.553 4.553 12 H 0.050 0.950 13 C 0.039 3.961 14 N -0.905 5.905 15 Si 0.962 3.038 16 H -0.279 1.279 17 H -0.272 1.272 18 H -0.263 1.263 19 H 0.065 0.935 20 H 0.105 0.895 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 8.453 -4.624 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.180 4.180 4 C -0.213 4.213 5 C -0.088 4.088 6 N -0.182 5.182 7 N -0.116 5.116 8 N -0.113 5.113 9 N -0.075 5.075 10 C 0.130 3.870 11 C -0.591 4.591 12 H 0.069 0.931 13 C -0.164 4.164 14 N -0.542 5.542 15 Si 0.787 3.213 16 H -0.205 1.205 17 H -0.197 1.197 18 H -0.188 1.188 19 H 0.084 0.916 20 H 0.123 0.877 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.224 8.256 -3.432 9.025 hybrid contribution 0.211 -1.126 -0.855 1.430 sum -1.013 7.130 -4.287 8.381 Atomic orbital electron populations 1.22029 0.91204 1.02279 1.04670 1.19427 0.97108 0.95874 0.86095 1.21730 1.01134 0.91478 1.03702 1.22179 1.00793 1.02270 0.96086 1.26670 0.99102 0.82936 1.00067 1.74723 1.16981 1.25106 1.01407 1.78369 1.18451 0.92925 1.21842 1.78718 1.11909 1.21636 0.99080 1.49048 1.34789 1.10335 1.13378 1.20202 0.93115 0.85018 0.88678 1.21043 0.93096 1.20687 1.24323 0.93147 1.25499 0.97417 0.96314 0.97171 1.69944 1.15638 1.31078 1.37546 0.85526 0.78734 0.78566 0.78519 1.20505 1.19676 1.18795 0.91636 0.87657 0.93521 0.93023 0.88324 0.91971 0.91142 0.88388 0.93817 0.93983 0.89445 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.36 71.98 0.60 -3.13 16 2 C 0.02 0.56 0.75 -52.93 -0.04 0.52 16 3 C -0.12 -2.99 8.00 71.98 0.58 -2.42 16 4 C -0.16 -4.83 8.22 71.98 0.59 -4.24 16 5 C 0.19 7.64 6.41 138.14 0.89 8.53 16 6 N -0.33 -14.28 11.72 -50.45 -0.59 -14.87 16 7 N -0.12 -5.78 13.43 37.01 0.50 -5.28 16 8 N -0.13 -6.18 13.29 37.02 0.49 -5.69 16 9 N -0.27 -12.50 3.33 -341.97 -1.14 -13.64 16 10 C 0.25 11.60 5.16 85.63 0.44 12.04 16 11 C -0.55 -27.83 7.75 25.60 0.20 -27.63 16 12 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 13 C 0.04 1.94 5.46 84.65 0.46 2.41 16 14 N -0.91 -45.96 13.29 21.45 0.28 -45.68 16 15 Si 0.96 39.69 29.54 68.60 2.03 41.72 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 19 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 20 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 21 H 0.05 1.40 5.72 -2.39 -0.01 1.39 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 2.66 4.22 -2.39 -0.01 2.65 16 26 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 3.86 4.43 -2.39 -0.01 3.85 16 30 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 Total: -1.00 -57.72 251.65 6.43 -51.29 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.14 Total: 6.07 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 3.72 Total: -13.93 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -0.46 Total: -85.15 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -57.72 6.43 -51.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306326272.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.824 kcal (2) G-P(sol) polarization free energy of solvation -57.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds