Wall clock time and date at job start Sun Mar 29 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76199 * 103.00105 * 2 1 4 4 C 1.39355 * 120.80324 * 180.02562 * 3 2 1 5 5 N 1.32191 * 119.09133 * 180.02562 * 4 3 2 6 6 C 1.32510 * 120.82933 * 0.02562 * 5 4 3 7 7 N 1.38561 * 119.11511 * 179.97438 * 6 5 4 8 8 C 1.36965 * 119.99580 * 179.71986 * 7 6 5 9 9 H 1.08001 * 120.00255 * 0.27490 * 8 7 6 10 10 C 1.38776 * 120.00196 * 180.27581 * 8 7 6 11 11 N 1.31584 * 119.99606 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00188 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47294 * 90.00136 * 12 10 8 14 14 H 1.48499 * 109.47218 * 209.99996 * 12 10 8 15 15 H 1.48496 * 109.47166 * 329.99828 * 12 10 8 16 16 N 1.32506 * 121.76077 * 0.27042 * 6 5 4 17 17 C 1.32187 * 120.82509 * 359.44301 * 16 6 5 18 18 H 1.08997 * 109.47281 * 300.00132 * 1 2 3 19 19 H 1.08999 * 109.46704 * 60.00215 * 1 2 3 20 20 H 1.09004 * 109.46715 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.45728 * 359.97438 * 4 3 2 22 22 H 0.97001 * 120.00625 * 0.02562 * 7 6 5 23 23 H 0.96999 * 119.99762 * 180.02562 * 11 10 8 24 24 H 1.08005 * 120.45172 * 180.25155 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5373 2.1429 -0.0005 5 7 3.7960 3.4392 0.0000 6 6 2.8131 4.3279 0.0015 7 7 3.1249 5.6780 0.0026 8 6 2.1232 6.6121 -0.0016 9 1 1.0904 6.2963 -0.0013 10 6 2.4353 7.9643 -0.0063 11 7 3.6937 8.3489 -0.0073 12 14 1.0692 9.2382 -0.0114 13 1 0.7067 9.5808 1.3874 14 1 1.5343 10.4600 -0.7156 15 1 -0.1195 8.6865 -0.7098 16 7 1.5402 3.9600 0.0079 17 6 1.2046 2.6814 0.0020 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 4.3431 1.4239 -0.0005 22 1 4.0525 5.9616 0.0018 23 1 3.9119 9.2941 -0.0102 24 1 0.1651 2.3883 0.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306327710.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:30 Heat of formation + Delta-G solvation = 51.466852 kcal Electronic energy + Delta-G solvation = -11275.756174 eV Core-core repulsion = 9122.647268 eV Total energy + Delta-G solvation = -2153.108906 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.67053 -35.50251 -32.66991 -32.20969 -29.67079 -28.63139 -25.19477 -23.47404 -22.12570 -18.26327 -17.35677 -16.63860 -16.04550 -14.89174 -14.25798 -14.15172 -13.75424 -13.37559 -13.33800 -12.77894 -12.44283 -11.78564 -11.49844 -10.82244 -10.75342 -10.51795 -10.48344 -9.92241 -9.59487 -9.35051 -8.20774 -8.06625 -6.77129 -6.66523 -3.93162 1.95609 2.07565 2.19089 2.98630 3.08534 3.09880 3.15291 3.87978 4.50753 4.56871 5.15065 5.17257 5.25383 5.25541 5.37047 5.79935 6.03480 6.06747 6.50850 7.06803 7.27397 7.66069 8.06424 8.46200 8.85853 9.08893 9.67634 10.38105 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.063928 B = 0.007165 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.885312 B = 3907.126878 C = 4329.859186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.138 6.138 3 C -0.343 4.343 4 C 0.230 3.770 5 N -0.585 5.585 6 C 0.480 3.520 7 N -0.490 5.490 8 C -0.281 4.281 9 H 0.118 0.882 10 C 0.020 3.980 11 N -0.879 5.879 12 Si 0.944 3.056 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.265 1.265 16 N -0.560 5.560 17 C 0.200 3.800 18 H 0.077 0.923 19 H 0.077 0.923 20 H 0.098 0.902 21 H 0.150 0.850 22 H 0.413 0.587 23 H 0.280 0.720 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -9.442 -0.018 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.094 5.906 3 C -0.469 4.469 4 C 0.052 3.948 5 N -0.311 5.311 6 C 0.125 3.875 7 N -0.098 5.098 8 C -0.413 4.413 9 H 0.136 0.864 10 C -0.186 4.186 11 N -0.514 5.514 12 Si 0.769 3.231 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.189 1.189 16 N -0.285 5.285 17 C 0.021 3.979 18 H 0.096 0.904 19 H 0.096 0.904 20 H 0.117 0.883 21 H 0.167 0.833 22 H 0.250 0.750 23 H 0.090 0.910 24 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.875 -8.677 -0.014 9.503 hybrid contribution -1.192 0.983 0.002 1.545 sum -5.067 -7.694 -0.012 9.213 Atomic orbital electron populations 1.23472 0.95967 1.06005 1.05101 1.84660 1.05324 1.05014 1.95619 1.22217 0.98987 0.96515 1.29167 1.22113 0.93119 0.91037 0.88539 1.67781 1.35871 1.01913 1.25509 1.19085 0.84676 0.86793 0.96901 1.40680 1.10337 0.99306 1.59469 1.20064 0.90057 0.85288 1.45880 0.86439 1.25533 0.97962 0.98435 0.96636 1.69709 1.17194 1.18315 1.46222 0.85627 0.79803 0.78852 0.78770 1.19926 1.20496 1.18933 1.67791 1.19434 1.17614 1.23663 1.22590 0.97763 0.87536 0.90024 0.90375 0.90380 0.88327 0.83279 0.75000 0.90992 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 101.05 0.93 -0.58 14 2 S -0.14 -2.03 22.60 -107.50 -2.43 -4.46 14 3 C -0.34 -6.39 6.15 -38.75 -0.24 -6.63 14 4 C 0.23 4.55 11.09 -16.98 -0.19 4.37 14 5 N -0.59 -13.55 10.45 -13.71 -0.14 -13.69 14 6 C 0.48 11.98 8.38 -322.54 -2.70 9.28 14 7 N -0.49 -12.81 5.43 -12.78 -0.07 -12.88 14 8 C -0.28 -7.44 9.69 -15.06 -0.15 -7.58 14 9 H 0.12 3.11 7.04 -52.49 -0.37 2.74 14 10 C 0.02 0.51 5.50 -17.46 -0.10 0.41 14 11 N -0.88 -23.15 13.05 55.49 0.72 -22.43 14 12 Si 0.94 19.72 29.55 -169.99 -5.02 14.69 14 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 14 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 16 N -0.56 -13.30 9.09 -13.71 -0.12 -13.42 14 17 C 0.20 3.95 10.63 -16.98 -0.18 3.77 14 18 H 0.08 0.84 7.79 -51.93 -0.40 0.44 14 19 H 0.08 0.84 7.80 -51.92 -0.40 0.43 14 20 H 0.10 0.86 8.14 -51.92 -0.42 0.44 14 21 H 0.15 2.47 8.06 -52.49 -0.42 2.04 14 22 H 0.41 10.89 8.01 -40.82 -0.33 10.56 14 23 H 0.28 6.89 8.31 -40.82 -0.34 6.55 14 24 H 0.14 2.33 6.06 -52.48 -0.32 2.01 14 LS Contribution 233.31 15.07 3.52 3.52 Total: -1.00 -28.10 233.31 -7.98 -36.07 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -1.80 Total: 9.57 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.62 Total: 3.03 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.39 Total: -62.42 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.43 Total: -4.46 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.10 -7.98 -36.07 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306327710.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.540 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds