Wall clock time and date at job start Sun Mar 29 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76199 * 103.00105 * 2 1 4 4 C 1.39355 * 120.80324 * 180.02562 * 3 2 1 5 5 N 1.32191 * 119.09133 * 180.02562 * 4 3 2 6 6 C 1.32510 * 120.82933 * 0.02562 * 5 4 3 7 7 N 1.38561 * 119.11511 * 179.97438 * 6 5 4 8 8 C 1.36965 * 119.99580 * 179.71986 * 7 6 5 9 9 H 1.08001 * 120.00255 * 0.27490 * 8 7 6 10 10 C 1.38776 * 120.00196 * 180.27581 * 8 7 6 11 11 N 1.31584 * 119.99606 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00188 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47294 * 90.00136 * 12 10 8 14 14 H 1.48499 * 109.47218 * 209.99996 * 12 10 8 15 15 H 1.48496 * 109.47166 * 329.99828 * 12 10 8 16 16 N 1.32506 * 121.76077 * 0.27042 * 6 5 4 17 17 C 1.32187 * 120.82509 * 359.44301 * 16 6 5 18 18 H 1.08997 * 109.47281 * 300.00132 * 1 2 3 19 19 H 1.08999 * 109.46704 * 60.00215 * 1 2 3 20 20 H 1.09004 * 109.46715 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.45728 * 359.97438 * 4 3 2 22 22 H 0.97001 * 120.00625 * 0.02562 * 7 6 5 23 23 H 0.96999 * 119.99762 * 180.02562 * 11 10 8 24 24 H 1.08005 * 120.45172 * 180.25155 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5373 2.1429 -0.0005 5 7 3.7960 3.4392 0.0000 6 6 2.8131 4.3279 0.0015 7 7 3.1249 5.6780 0.0026 8 6 2.1232 6.6121 -0.0016 9 1 1.0904 6.2963 -0.0013 10 6 2.4353 7.9643 -0.0063 11 7 3.6937 8.3489 -0.0073 12 14 1.0692 9.2382 -0.0114 13 1 0.7067 9.5808 1.3874 14 1 1.5343 10.4600 -0.7156 15 1 -0.1195 8.6865 -0.7098 16 7 1.5402 3.9600 0.0079 17 6 1.2046 2.6814 0.0020 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 4.3431 1.4239 -0.0005 22 1 4.0525 5.9616 0.0018 23 1 3.9119 9.2941 -0.0102 24 1 0.1651 2.3883 0.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306327710.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:30 Heat of formation + Delta-G solvation = 34.959635 kcal Electronic energy + Delta-G solvation = -11276.471980 eV Core-core repulsion = 9122.647268 eV Total energy + Delta-G solvation = -2153.824713 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.42259 -37.29397 -34.40007 -34.01722 -31.30708 -29.69034 -27.03459 -25.13119 -23.87136 -20.10020 -19.06570 -18.03791 -17.81916 -16.54928 -15.88622 -15.76454 -15.44240 -14.86513 -14.35346 -14.22375 -13.59793 -13.48750 -13.20554 -12.57274 -12.39017 -12.13472 -12.00571 -11.68412 -11.06382 -11.02143 -9.89447 -9.79095 -8.59979 -8.06512 -5.86875 0.28946 0.51999 0.85840 1.40564 1.46639 1.55232 1.72165 2.18480 2.74095 2.78101 3.34349 3.57316 3.83341 4.25254 4.39959 4.42005 4.47708 4.86566 4.99126 5.24395 5.47859 5.83174 6.35192 6.59780 7.03905 7.25316 7.85938 8.57555 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.063928 B = 0.007165 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.885312 B = 3907.126878 C = 4329.859186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.122 6.122 3 C -0.325 4.325 4 C 0.216 3.784 5 N -0.606 5.606 6 C 0.479 3.521 7 N -0.520 5.520 8 C -0.307 4.307 9 H 0.109 0.891 10 C -0.025 4.025 11 N -0.919 5.919 12 Si 1.011 2.989 13 H -0.269 1.269 14 H -0.274 1.274 15 H -0.261 1.261 16 N -0.588 5.588 17 C 0.189 3.811 18 H 0.086 0.914 19 H 0.085 0.915 20 H 0.129 0.871 21 H 0.183 0.817 22 H 0.404 0.596 23 H 0.281 0.719 24 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -11.776 -0.020 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.111 5.889 3 C -0.448 4.448 4 C 0.040 3.960 5 N -0.332 5.332 6 C 0.124 3.876 7 N -0.133 5.133 8 C -0.438 4.438 9 H 0.126 0.874 10 C -0.226 4.226 11 N -0.557 5.557 12 Si 0.833 3.167 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.186 1.186 16 N -0.314 5.314 17 C 0.012 3.988 18 H 0.104 0.896 19 H 0.104 0.896 20 H 0.148 0.852 21 H 0.200 0.800 22 H 0.239 0.761 23 H 0.091 0.909 24 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.597 -11.154 -0.015 12.479 hybrid contribution -0.737 1.154 0.004 1.370 sum -6.334 -10.000 -0.011 11.837 Atomic orbital electron populations 1.23687 0.92523 1.08369 1.05931 1.84743 1.09000 1.00278 1.94875 1.22730 0.98423 0.99595 1.24088 1.22811 0.94966 0.90457 0.87729 1.67824 1.35942 1.03267 1.26165 1.19415 0.85552 0.86943 0.95703 1.40629 1.09680 0.99796 1.63146 1.20100 0.89775 0.86098 1.47779 0.87358 1.26400 1.00206 0.99787 0.96172 1.69802 1.18833 1.18568 1.48508 0.84652 0.76952 0.76286 0.78823 1.19420 1.19900 1.18554 1.67816 1.19043 1.19846 1.24679 1.23287 0.99851 0.86513 0.89107 0.89550 0.89557 0.85237 0.80004 0.76054 0.90925 0.80293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.18 113.37 1.04 -1.29 14 2 S -0.12 -3.07 22.60 -56.49 -1.28 -4.35 14 3 C -0.32 -11.17 6.15 22.81 0.14 -11.03 14 4 C 0.22 8.15 11.09 84.91 0.94 9.09 14 5 N -0.61 -28.05 10.45 -197.30 -2.06 -30.11 14 6 C 0.48 24.33 8.38 261.39 2.19 26.52 14 7 N -0.52 -28.43 5.43 -194.34 -1.06 -29.49 14 8 C -0.31 -16.86 9.69 84.02 0.81 -16.05 14 9 H 0.11 5.94 7.04 -2.91 -0.02 5.92 14 10 C -0.02 -1.30 5.50 84.86 0.47 -0.83 14 11 N -0.92 -50.42 13.05 21.64 0.28 -50.14 14 12 Si 1.01 41.31 29.55 68.60 2.03 43.33 14 13 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 14 H -0.27 -10.79 7.11 99.48 0.71 -10.08 14 15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 14 16 N -0.59 -27.76 9.09 -197.29 -1.79 -29.55 14 17 C 0.19 7.02 10.63 84.91 0.90 7.92 14 18 H 0.09 1.42 7.79 -2.39 -0.02 1.40 14 19 H 0.09 1.42 7.80 -2.39 -0.02 1.40 14 20 H 0.13 1.52 8.14 -2.39 -0.02 1.50 14 21 H 0.18 5.52 8.06 -2.91 -0.02 5.49 14 22 H 0.40 22.58 8.01 -92.71 -0.74 21.84 14 23 H 0.28 14.35 8.31 -92.71 -0.77 13.58 14 24 H 0.18 5.18 6.06 -2.91 -0.02 5.16 14 Total: -1.00 -62.43 233.31 3.11 -59.32 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.49 Total: 26.65 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.50 Total: 14.34 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -4.63 Total: -139.29 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -1.28 Total: -4.35 kcal Total: -62.43 3.11 -59.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306327710.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.281 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds