Wall clock time and date at job start Sun Mar 29 2020 21:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36707 * 126.58587 * 2 1 4 4 C 1.47346 * 125.78427 * 359.92899 * 3 2 1 5 5 O 1.21543 * 119.99960 * 0.02562 * 4 3 2 6 6 O 1.34785 * 119.99712 * 179.97438 * 4 3 2 7 7 C 1.34876 * 116.99545 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00447 * 0.02562 * 7 6 4 9 9 C 1.38780 * 119.99708 * 180.02562 * 7 6 4 10 10 N 1.31433 * 119.99992 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99783 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47318 * 60.00383 * 11 9 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47423 * 300.00090 * 11 9 7 15 15 N 1.34448 * 108.42831 * 180.19145 * 3 2 1 16 16 N 1.28757 * 109.52275 * 359.61545 * 15 3 2 17 17 N 1.34802 * 126.58823 * 179.97438 * 2 1 3 18 18 C 1.46499 * 126.58263 * 0.05112 * 17 2 1 19 19 H 1.08997 * 109.47161 * 90.02441 * 1 2 3 20 20 H 1.09001 * 109.47260 * 210.02309 * 1 2 3 21 21 H 1.08999 * 109.47169 * 330.02102 * 1 2 3 22 22 H 0.97005 * 120.00240 * 179.97438 * 10 9 7 23 23 H 1.09003 * 109.47211 * 90.00662 * 18 17 2 24 24 H 1.09006 * 109.47387 * 210.00158 * 18 17 2 25 25 H 1.08994 * 109.47713 * 330.00392 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3218 1.0977 0.0000 4 6 1.8755 2.5020 -0.0015 5 8 0.6883 2.7623 -0.0024 6 8 2.7839 3.4977 -0.0008 7 6 2.3087 4.7600 -0.0028 8 1 1.2431 4.9359 -0.0044 9 6 3.1890 5.8328 -0.0027 10 7 4.4858 5.6188 -0.0013 11 14 2.5308 7.5810 -0.0047 12 1 1.7002 7.7986 1.2068 13 1 3.6668 8.5375 -0.0050 14 1 1.7024 7.7967 -1.2182 15 7 3.5993 0.6787 -0.0043 16 7 3.6300 -0.6085 0.0012 17 7 2.3105 -1.0824 0.0005 18 6 1.8863 -2.4846 0.0001 19 1 -0.3633 -0.0004 -1.0276 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5135 22 1 5.1012 6.3687 -0.0016 23 1 1.7820 -2.8324 -1.0277 24 1 2.6326 -3.0902 0.5144 25 1 0.9289 -2.5749 0.5131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306353472.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:50 Heat of formation + Delta-G solvation = 18.186784 kcal Electronic energy + Delta-G solvation = -13547.381128 eV Core-core repulsion = 10950.076219 eV Total energy + Delta-G solvation = -2597.304909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.78668 -38.65530 -35.19810 -34.59570 -32.11006 -31.90832 -28.11590 -27.25422 -25.36633 -22.96206 -20.97987 -19.86262 -17.71963 -17.34153 -16.12058 -15.60410 -14.77696 -14.36462 -14.34043 -13.85436 -13.42593 -13.23876 -12.82524 -12.48943 -12.36189 -11.66498 -11.42437 -11.18483 -10.66312 -10.43049 -10.42448 -9.88406 -9.79735 -9.12125 -8.69881 -8.52464 -6.36854 -4.02548 1.45793 2.30763 2.31417 3.21449 3.22294 3.26216 3.93053 4.07910 4.37056 4.57925 4.67693 4.88994 4.95293 5.15494 5.20954 5.42880 5.61541 5.88321 5.92428 6.14704 6.70020 6.89453 7.41217 7.96108 8.41299 8.71428 9.09128 9.89966 10.80022 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.064873 B = 0.007816 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.506186 B = 3581.616581 C = 3992.676483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.103 3.897 3 C -0.051 4.051 4 C 0.475 3.525 5 O -0.553 6.553 6 O -0.188 6.188 7 C -0.381 4.381 8 H 0.099 0.901 9 C 0.042 3.958 10 N -0.852 5.852 11 Si 0.947 3.053 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.269 1.269 15 N -0.180 5.180 16 N -0.086 5.086 17 N -0.374 5.374 18 C 0.092 3.908 19 H 0.087 0.913 20 H 0.068 0.932 21 H 0.112 0.888 22 H 0.271 0.729 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 -12.655 0.071 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.033 4.033 3 C -0.188 4.188 4 C 0.321 3.679 5 O -0.451 6.451 6 O -0.092 6.092 7 C -0.457 4.457 8 H 0.116 0.884 9 C -0.163 4.163 10 N -0.488 5.488 11 Si 0.771 3.229 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.194 1.194 15 N -0.054 5.054 16 N -0.065 5.065 17 N -0.161 5.161 18 C -0.049 4.049 19 H 0.106 0.894 20 H 0.087 0.913 21 H 0.131 0.869 22 H 0.081 0.919 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.655 -12.871 0.071 14.059 hybrid contribution -1.173 0.795 -0.029 1.417 sum -6.828 -12.077 0.042 13.873 Atomic orbital electron populations 1.20639 0.84918 1.04943 1.04259 1.21739 0.95944 0.86318 0.99325 1.20486 0.88479 0.93780 1.16092 1.19107 0.84509 0.84114 0.80155 1.90599 1.17520 1.83882 1.53132 1.84004 1.36480 1.14900 1.73866 1.21287 0.94212 0.78016 1.52182 0.88387 1.25412 0.94941 0.99839 0.96120 1.70028 1.01449 1.32553 1.44745 0.85704 0.78185 0.79662 0.79350 1.19397 1.20351 1.19405 1.74814 1.19329 1.02836 1.08375 1.81969 0.95804 1.04217 1.24528 1.50200 1.06773 1.07253 1.51875 1.22028 1.02037 0.76696 1.04172 0.89449 0.91283 0.86905 0.91858 0.89747 0.88463 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.57 36.00 0.34 -0.81 15 2 C 0.10 1.78 7.02 -81.84 -0.57 1.21 15 3 C -0.05 -1.15 7.02 -83.57 -0.59 -1.74 15 4 C 0.47 12.68 7.90 34.44 0.27 12.96 15 5 O -0.55 -14.63 13.97 -19.30 -0.27 -14.90 15 6 O -0.19 -5.78 9.75 -21.85 -0.21 -5.99 15 7 C -0.38 -11.54 9.65 30.93 0.30 -11.24 15 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 15 9 C 0.04 1.22 5.49 -17.52 -0.10 1.13 15 10 N -0.85 -25.86 13.67 55.48 0.76 -25.10 15 11 Si 0.95 21.51 29.55 -169.99 -5.02 16.48 15 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 13 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 15 N -0.18 -4.23 12.39 32.83 0.41 -3.82 15 16 N -0.09 -1.68 13.78 60.35 0.83 -0.84 15 17 N -0.37 -5.69 4.03 -63.56 -0.26 -5.95 15 18 C 0.09 0.75 11.33 59.85 0.68 1.43 15 19 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 20 H 0.07 0.61 7.18 -51.93 -0.37 0.23 15 21 H 0.11 1.74 6.43 -51.93 -0.33 1.40 15 22 H 0.27 7.50 8.31 -40.82 -0.34 7.17 15 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.10 0.67 8.14 -51.93 -0.42 0.24 15 25 H 0.09 0.50 7.16 -51.93 -0.37 0.13 15 LS Contribution 236.82 15.07 3.57 3.57 Total: -1.00 -36.22 236.82 -1.70 -37.92 By element: Atomic # 1 Polarization: -2.47 SS G_CDS: -1.84 Total: -4.31 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 0.34 Total: 2.93 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 1.74 Total: -35.71 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.48 Total: -20.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -36.22 -1.70 -37.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306353472.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.107 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds