Wall clock time and date at job start Sun Mar 29 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29923 * 125.36207 * 2 1 4 4 C 1.36105 * 108.47576 * 179.97438 * 3 2 1 5 5 C 1.47233 * 126.45926 * 179.97438 * 4 3 2 6 6 O 1.21562 * 119.99790 * 180.02562 * 5 4 3 7 7 O 1.34796 * 119.99790 * 0.03004 * 5 4 3 8 8 C 1.34880 * 116.99930 * 179.97438 * 7 5 4 9 9 H 1.08003 * 119.99635 * 0.02562 * 8 7 5 10 10 C 1.38768 * 120.00213 * 179.97438 * 8 7 5 11 11 N 1.31445 * 119.99694 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00215 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47109 * 89.99665 * 12 10 8 14 14 H 1.48504 * 109.47209 * 210.00127 * 12 10 8 15 15 H 1.48504 * 109.46933 * 329.99900 * 12 10 8 16 16 C 1.36220 * 107.07662 * 0.02562 * 4 3 2 17 17 C 1.50699 * 126.53675 * 180.02562 * 16 4 3 18 18 O 1.34051 * 125.36251 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.47148 * 90.02867 * 1 2 3 20 20 H 1.09004 * 109.46927 * 210.02623 * 1 2 3 21 21 H 1.08995 * 109.46911 * 330.02421 * 1 2 3 22 22 H 0.97006 * 119.99851 * 179.97438 * 11 10 8 23 23 H 1.08997 * 109.47298 * 89.99290 * 17 16 4 24 24 H 1.09004 * 109.47374 * 210.00031 * 17 16 4 25 25 H 1.09003 * 109.47215 * 329.99665 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2590 1.0595 0.0000 4 6 3.5613 0.6642 0.0006 5 6 4.7425 1.5432 0.0003 6 8 5.8586 1.0614 0.0004 7 8 4.5863 2.8820 -0.0001 8 6 5.7090 3.6295 0.0002 9 1 6.6768 3.1502 0.0002 10 6 5.6206 5.0144 -0.0007 11 7 6.7148 5.7428 -0.0010 12 14 3.9466 5.8435 -0.0015 13 1 3.5028 6.0639 1.3983 14 1 4.0413 7.1493 -0.7024 15 1 2.9650 4.9762 -0.7012 16 6 3.5659 -0.6980 0.0003 17 6 4.7797 -1.5911 0.0013 18 8 2.2829 -1.0932 -0.0005 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5134 22 1 6.6530 6.7109 -0.0020 23 1 5.0714 -1.8066 1.0292 24 1 4.5454 -2.5233 -0.5129 25 1 5.6003 -1.0896 -0.5117 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306488245.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:33 Heat of formation + Delta-G solvation = -59.106074 kcal Electronic energy + Delta-G solvation = -13588.080383 eV Core-core repulsion = 10955.131053 eV Total energy + Delta-G solvation = -2632.949330 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.14935 -39.00303 -35.49766 -34.60159 -32.78596 -32.32337 -29.99986 -26.76830 -25.08784 -22.95061 -21.28506 -19.71805 -17.95237 -17.43553 -16.83016 -15.68945 -14.94255 -14.58535 -14.24067 -13.83951 -13.47009 -13.41513 -12.66180 -12.64357 -12.39103 -12.15847 -12.04174 -11.44414 -10.90508 -10.45485 -10.38439 -10.32896 -9.70795 -9.34395 -8.69197 -8.49137 -6.40481 -4.12305 1.36687 2.35453 2.67296 3.25433 3.29262 3.48597 3.86595 3.90120 4.27284 4.32565 4.85170 5.12809 5.16103 5.30548 5.48301 5.50453 5.61397 5.68850 6.01318 6.08176 6.25372 6.59738 7.67454 7.79922 8.01696 8.55848 8.97503 9.67480 10.66641 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.037176 B = 0.010039 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.991821 B = 2788.471617 C = 3521.017798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.175 3.825 3 N -0.443 5.443 4 C -0.023 4.023 5 C 0.485 3.515 6 O -0.534 6.534 7 O -0.224 6.224 8 C -0.377 4.377 9 H 0.113 0.887 10 C 0.069 3.931 11 N -0.867 5.867 12 Si 0.903 3.097 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.254 1.254 16 C 0.018 3.982 17 C -0.070 4.070 18 O -0.202 6.202 19 H 0.091 0.909 20 H 0.086 0.914 21 H 0.101 0.899 22 H 0.281 0.719 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.440 -11.800 -0.044 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.034 4.034 3 N -0.173 5.173 4 C -0.141 4.141 5 C 0.332 3.668 6 O -0.430 6.430 7 O -0.131 6.131 8 C -0.452 4.452 9 H 0.130 0.870 10 C -0.136 4.136 11 N -0.505 5.505 12 Si 0.728 3.272 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.177 1.177 16 C -0.037 4.037 17 C -0.126 4.126 18 O -0.090 6.090 19 H 0.109 0.891 20 H 0.105 0.895 21 H 0.119 0.881 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.094 0.906 25 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.296 -11.070 -0.049 15.816 hybrid contribution -0.362 -0.076 0.033 0.371 sum -11.658 -11.146 -0.016 16.129 Atomic orbital electron populations 1.20222 0.81145 1.04968 1.04567 1.26229 0.96482 0.78468 1.02235 1.70916 1.01087 1.29378 1.15949 1.20712 0.91014 0.91127 1.11293 1.18786 0.85588 0.82165 0.80221 1.90668 1.24939 1.75909 1.51484 1.83645 1.37807 1.16165 1.75457 1.20760 0.84943 0.88314 1.51232 0.86989 1.24556 0.98961 0.94943 0.95178 1.69611 1.27779 1.06642 1.46508 0.86217 0.83257 0.78486 0.79253 1.19713 1.20704 1.17718 1.23554 0.83706 0.94242 1.02171 1.20530 0.90438 0.97234 1.04411 1.84257 1.16308 1.37938 1.70517 0.89063 0.89521 0.88056 0.90858 0.89356 0.90616 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.49 10.51 36.01 0.38 -0.11 15 2 C 0.17 2.74 8.30 -13.08 -0.11 2.63 15 3 N -0.44 -9.12 11.36 -7.67 -0.09 -9.20 15 4 C -0.02 -0.50 7.04 -83.04 -0.58 -1.09 15 5 C 0.49 12.66 7.89 34.39 0.27 12.93 15 6 O -0.53 -14.29 14.06 -19.31 -0.27 -14.56 15 7 O -0.22 -6.46 8.58 -21.89 -0.19 -6.65 15 8 C -0.38 -11.59 10.11 30.93 0.31 -11.28 15 9 H 0.11 3.69 7.09 -52.48 -0.37 3.32 15 10 C 0.07 2.02 5.49 -17.52 -0.10 1.92 15 11 N -0.87 -25.93 13.96 55.48 0.77 -25.16 15 12 Si 0.90 22.46 28.62 -169.99 -4.86 17.59 15 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 15 H -0.25 -6.41 7.11 56.52 0.40 -6.01 15 16 C 0.02 0.32 7.44 -35.03 -0.26 0.06 15 17 C -0.07 -0.98 9.88 36.01 0.36 -0.62 15 18 O -0.20 -3.18 10.72 6.53 0.07 -3.11 15 19 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.09 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.10 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.28 7.66 8.31 -40.82 -0.34 7.32 15 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.11 1.81 6.48 -51.93 -0.34 1.48 15 LS Contribution 237.88 15.07 3.58 3.58 Total: -1.00 -34.70 237.88 -2.67 -37.37 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: -1.96 Total: -4.31 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 0.27 Total: 4.45 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.69 Total: -34.36 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.39 Total: -24.32 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.86 Total: 17.59 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -34.70 -2.67 -37.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306488245.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.735 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds