Wall clock time and date at job start Sun Mar 29 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29923 * 125.36207 * 2 1 4 4 C 1.36105 * 108.47576 * 179.97438 * 3 2 1 5 5 C 1.47233 * 126.45926 * 179.97438 * 4 3 2 6 6 O 1.21562 * 119.99790 * 180.02562 * 5 4 3 7 7 O 1.34796 * 119.99790 * 0.03004 * 5 4 3 8 8 C 1.34880 * 116.99930 * 179.97438 * 7 5 4 9 9 H 1.08003 * 119.99635 * 0.02562 * 8 7 5 10 10 C 1.38768 * 120.00213 * 179.97438 * 8 7 5 11 11 N 1.31445 * 119.99694 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00215 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47109 * 89.99665 * 12 10 8 14 14 H 1.48504 * 109.47209 * 210.00127 * 12 10 8 15 15 H 1.48504 * 109.46933 * 329.99900 * 12 10 8 16 16 C 1.36220 * 107.07662 * 0.02562 * 4 3 2 17 17 C 1.50699 * 126.53675 * 180.02562 * 16 4 3 18 18 O 1.34051 * 125.36251 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.47148 * 90.02867 * 1 2 3 20 20 H 1.09004 * 109.46927 * 210.02623 * 1 2 3 21 21 H 1.08995 * 109.46911 * 330.02421 * 1 2 3 22 22 H 0.97006 * 119.99851 * 179.97438 * 11 10 8 23 23 H 1.08997 * 109.47298 * 89.99290 * 17 16 4 24 24 H 1.09004 * 109.47374 * 210.00031 * 17 16 4 25 25 H 1.09003 * 109.47215 * 329.99665 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2590 1.0595 0.0000 4 6 3.5613 0.6642 0.0006 5 6 4.7425 1.5432 0.0003 6 8 5.8586 1.0614 0.0004 7 8 4.5863 2.8820 -0.0001 8 6 5.7090 3.6295 0.0002 9 1 6.6768 3.1502 0.0002 10 6 5.6206 5.0144 -0.0007 11 7 6.7148 5.7428 -0.0010 12 14 3.9466 5.8435 -0.0015 13 1 3.5028 6.0639 1.3983 14 1 4.0413 7.1493 -0.7024 15 1 2.9650 4.9762 -0.7012 16 6 3.5659 -0.6980 0.0003 17 6 4.7797 -1.5911 0.0013 18 8 2.2829 -1.0932 -0.0005 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5134 22 1 6.6530 6.7109 -0.0020 23 1 5.0714 -1.8066 1.0292 24 1 4.5454 -2.5233 -0.5129 25 1 5.6003 -1.0896 -0.5117 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306488245.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:33 Heat of formation + Delta-G solvation = -86.274168 kcal Electronic energy + Delta-G solvation = -13589.258480 eV Core-core repulsion = 10955.131053 eV Total energy + Delta-G solvation = -2634.127427 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.53538 -41.10472 -37.60374 -36.03183 -34.56978 -34.07986 -31.00150 -28.61332 -26.83488 -24.50073 -22.78398 -21.37629 -20.19060 -19.27923 -18.20050 -17.46892 -16.65758 -16.63043 -16.03835 -15.25722 -14.91294 -14.46595 -14.33969 -14.13629 -13.62047 -13.50104 -13.42757 -13.18238 -12.57402 -12.40386 -12.30373 -11.94955 -11.79472 -11.36354 -10.90170 -9.90670 -8.63184 -6.47385 -0.11544 0.86983 1.26958 1.33369 1.38037 1.52037 2.01644 2.12863 2.26044 2.86708 3.00680 3.51282 4.06728 4.13352 4.30439 4.54440 4.66322 4.67636 4.76586 4.87857 5.06588 5.23093 5.39478 5.79894 6.28152 6.50708 6.72178 7.48128 8.48796 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.037176 B = 0.010039 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.991821 B = 2788.471617 C = 3521.017798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.200 3.800 3 N -0.493 5.493 4 C -0.080 4.080 5 C 0.489 3.511 6 O -0.550 6.550 7 O -0.241 6.241 8 C -0.410 4.410 9 H 0.069 0.931 10 C 0.025 3.975 11 N -0.904 5.904 12 Si 0.976 3.024 13 H -0.259 1.259 14 H -0.255 1.255 15 H -0.263 1.263 16 C 0.053 3.947 17 C -0.072 4.072 18 O -0.187 6.187 19 H 0.116 0.884 20 H 0.122 0.878 21 H 0.108 0.892 22 H 0.293 0.707 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 -13.252 0.008 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.010 4.010 3 N -0.223 5.223 4 C -0.196 4.196 5 C 0.338 3.662 6 O -0.447 6.447 7 O -0.149 6.149 8 C -0.486 4.486 9 H 0.086 0.914 10 C -0.176 4.176 11 N -0.543 5.543 12 Si 0.796 3.204 13 H -0.184 1.184 14 H -0.179 1.179 15 H -0.187 1.187 16 C -0.003 4.003 17 C -0.128 4.128 18 O -0.075 6.075 19 H 0.134 0.866 20 H 0.140 0.860 21 H 0.126 0.874 22 H 0.103 0.897 23 H 0.126 0.874 24 H 0.138 0.862 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.294 -12.518 0.005 19.000 hybrid contribution 0.535 0.104 0.014 0.545 sum -13.759 -12.414 0.019 18.531 Atomic orbital electron populations 1.20673 0.76436 1.07045 1.06762 1.27494 0.98270 0.77134 0.98075 1.70832 1.00845 1.31786 1.18874 1.20357 0.90585 0.92008 1.16681 1.19663 0.87131 0.81772 0.77678 1.90637 1.26388 1.76066 1.51582 1.83655 1.36634 1.17425 1.77220 1.20479 0.84177 0.89372 1.54526 0.91354 1.25445 1.03353 0.94913 0.93932 1.69675 1.29988 1.07609 1.47037 0.85179 0.77370 0.77875 0.79956 1.18376 1.17889 1.18716 1.24055 0.85298 0.93052 0.97912 1.20712 0.88148 0.98030 1.05867 1.84341 1.15344 1.37719 1.70128 0.86576 0.85978 0.87354 0.89718 0.87435 0.86239 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 71.24 0.75 0.01 15 2 C 0.20 5.66 8.30 88.39 0.73 6.40 15 3 N -0.49 -19.84 11.36 -293.09 -3.33 -23.17 15 4 C -0.08 -3.50 7.04 40.38 0.28 -3.22 15 5 C 0.49 26.54 7.89 70.19 0.55 27.10 15 6 O -0.55 -30.91 14.06 19.64 0.28 -30.64 15 7 O -0.24 -14.51 8.58 10.42 0.09 -14.42 15 8 C -0.41 -26.58 10.11 67.95 0.69 -25.90 15 9 H 0.07 4.87 7.09 -2.91 -0.02 4.85 15 10 C 0.03 1.52 5.49 84.88 0.47 1.99 15 11 N -0.90 -55.56 13.96 21.63 0.30 -55.26 15 12 Si 0.98 46.87 28.62 68.60 1.96 48.83 15 13 H -0.26 -11.83 7.11 99.48 0.71 -11.12 15 14 H -0.25 -11.03 7.11 99.48 0.71 -10.33 15 15 H -0.26 -12.92 7.11 99.48 0.71 -12.21 15 16 C 0.05 1.79 7.44 25.22 0.19 1.97 15 17 C -0.07 -1.84 9.88 71.24 0.70 -1.14 15 18 O -0.19 -5.24 10.72 0.46 0.00 -5.23 15 19 H 0.12 1.19 8.14 -2.39 -0.02 1.18 15 20 H 0.12 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.29 16.11 8.31 -92.70 -0.77 15.34 15 23 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.12 2.06 8.14 -2.38 -0.02 2.04 15 25 H 0.09 2.84 6.48 -2.39 -0.02 2.82 15 Total: -1.00 -80.20 237.88 4.89 -75.31 By element: Atomic # 1 Polarization: -3.85 SS G_CDS: 1.22 Total: -2.63 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.37 Total: 7.21 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -3.03 Total: -78.42 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: 0.37 Total: -50.30 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.96 Total: 48.83 kcal Total: -80.20 4.89 -75.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306488245.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.960 kcal (2) G-P(sol) polarization free energy of solvation -80.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds