Wall clock time and date at job start Sun Mar 29 2020 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.46871 * 120.00441 * 2 1 4 4 O 1.21570 * 120.00505 * 179.97438 * 3 2 1 5 5 O 1.34817 * 119.99655 * 0.02562 * 3 2 1 6 6 C 1.34838 * 116.99683 * 180.02562 * 5 3 2 7 7 H 1.08000 * 119.99898 * 359.97438 * 6 5 3 8 8 C 1.38826 * 119.99734 * 179.97438 * 6 5 3 9 9 N 1.31412 * 119.99931 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47254 * 89.99805 * 10 8 6 12 12 H 1.48505 * 109.47405 * 210.00144 * 10 8 6 13 13 H 1.48510 * 109.46952 * 329.99795 * 10 8 6 14 14 C 1.33155 * 119.99530 * 179.97438 * 2 1 3 15 15 C 1.51446 * 126.33615 * 180.02562 * 14 2 1 16 16 C 1.54282 * 106.84905 * 180.33708 * 15 14 2 17 17 C 1.54987 * 103.74985 * 23.12444 * 16 15 14 18 18 C 1.51843 * 126.34605 * 359.97438 * 14 2 1 19 19 H 1.08998 * 109.47143 * 270.00196 * 1 2 3 20 20 H 1.09000 * 109.46720 * 30.00084 * 1 2 3 21 21 H 1.08995 * 109.47131 * 149.99910 * 1 2 3 22 22 H 0.97006 * 119.99761 * 180.02562 * 9 8 6 23 23 H 1.08996 * 109.99044 * 299.68401 * 15 14 2 24 24 H 1.09005 * 109.98620 * 60.99350 * 15 14 2 25 25 H 1.08996 * 110.57285 * 141.69135 * 16 15 14 26 26 H 1.09005 * 110.57234 * 264.55907 * 16 15 14 27 27 H 1.08999 * 110.83018 * 204.70408 * 17 16 15 28 28 H 1.09001 * 110.83046 * 81.12560 * 17 16 15 29 29 H 1.09004 * 110.43923 * 274.96951 * 18 14 2 30 30 H 1.09001 * 110.44013 * 37.36016 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2415 1.2719 0.0000 4 8 3.4572 1.2719 0.0005 5 8 1.5674 2.4394 0.0005 6 6 2.3019 3.5702 0.0000 7 1 3.3804 3.5136 -0.0005 8 6 1.6717 4.8072 -0.0001 9 7 0.3594 4.8760 -0.0001 10 14 2.6890 6.3738 -0.0002 11 1 2.9587 6.7889 -1.4002 12 1 1.9418 7.4494 0.6999 13 1 3.9756 6.1285 0.7000 14 6 2.1727 -1.1532 0.0005 15 6 3.6779 -1.3205 0.0011 16 6 3.9593 -2.8374 -0.0071 17 6 2.6658 -3.4488 -0.6031 18 6 1.5634 -2.5440 0.0017 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8899 -0.5138 22 1 -0.0810 5.7403 -0.0005 23 1 4.1046 -0.8577 -0.8887 24 1 4.1027 -0.8677 0.8971 25 1 4.8171 -3.0644 -0.6401 26 1 4.1233 -3.2021 1.0070 27 1 2.5403 -4.4818 -0.2790 28 1 2.6704 -3.3804 -1.6910 29 1 1.3300 -2.8565 1.0196 30 1 0.6668 -2.5673 -0.6177 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306539777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:53 Heat of formation + Delta-G solvation = -86.544085 kcal Electronic energy + Delta-G solvation = -13736.864265 eV Core-core repulsion = 11303.984139 eV Total energy + Delta-G solvation = -2432.880126 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.16017 -37.70047 -35.01047 -32.98156 -32.04264 -28.65260 -27.26821 -25.56635 -23.73485 -20.84386 -20.44311 -17.63726 -17.56843 -15.94903 -15.50702 -15.03765 -14.40415 -14.31242 -13.73907 -13.17114 -12.71499 -12.43934 -12.15012 -11.78212 -11.65504 -11.38677 -11.17753 -10.90841 -10.83547 -10.63002 -10.53017 -10.40360 -10.29041 -9.74628 -8.80327 -8.54729 -8.26234 -6.38591 -4.01913 1.96235 3.18211 3.20836 3.27239 3.98610 4.11599 4.49502 4.86784 4.98287 5.12117 5.20853 5.45321 5.60224 5.66758 5.75826 5.88016 5.94267 6.05394 6.11420 6.17779 6.27434 6.36440 6.51835 6.63284 6.70263 7.00064 7.32261 7.47261 8.00039 8.79206 9.10630 9.94392 10.79714 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.060267 B = 0.007447 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.486867 B = 3759.167978 C = 4173.048158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.126 4.126 3 C 0.432 3.568 4 O -0.555 6.555 5 O -0.209 6.209 6 C -0.376 4.376 7 H 0.095 0.905 8 C 0.040 3.960 9 N -0.863 5.863 10 Si 0.943 3.057 11 H -0.273 1.273 12 H -0.278 1.278 13 H -0.267 1.267 14 C -0.079 4.079 15 C -0.084 4.084 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.091 4.091 19 H 0.066 0.934 20 H 0.078 0.922 21 H 0.058 0.942 22 H 0.269 0.731 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -12.200 -0.203 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C 0.282 3.718 4 O -0.454 6.454 5 O -0.116 6.116 6 C -0.452 4.452 7 H 0.113 0.887 8 C -0.164 4.164 9 N -0.500 5.500 10 Si 0.768 3.232 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.191 1.191 14 C -0.080 4.080 15 C -0.120 4.120 16 C -0.166 4.166 17 C -0.160 4.160 18 C -0.128 4.128 19 H 0.084 0.916 20 H 0.097 0.903 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.251 -12.006 -0.196 12.072 hybrid contribution 0.435 0.877 0.018 0.979 sum 1.687 -11.129 -0.179 11.257 Atomic orbital electron populations 1.20663 0.90754 1.02686 1.02155 1.20230 0.95993 0.90102 1.06403 1.20858 0.86190 0.85443 0.79358 1.90615 1.15109 1.88170 1.51472 1.83940 1.39350 1.12895 1.75386 1.21257 0.91746 0.80741 1.51504 0.88736 1.25345 0.96119 0.98535 0.96388 1.69983 1.07772 1.25883 1.46397 0.85680 0.79183 0.79665 0.78707 1.19904 1.20340 1.19121 1.22456 0.96111 0.93093 0.96328 1.21154 0.92671 0.94501 1.03719 1.22467 0.97453 0.96039 1.00620 1.22508 0.94965 0.98236 1.00332 1.21452 0.98200 0.91770 1.01329 0.91558 0.90289 0.92326 0.92102 0.90073 0.90191 0.91687 0.91778 0.91523 0.91344 0.90183 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.58 36.01 0.34 -1.54 16 2 C -0.13 -2.61 6.00 -102.90 -0.62 -3.23 16 3 C 0.43 11.37 7.81 34.22 0.27 11.64 16 4 O -0.55 -15.33 13.36 -19.32 -0.26 -15.59 16 5 O -0.21 -6.19 9.00 -21.83 -0.20 -6.39 16 6 C -0.38 -11.42 9.65 30.95 0.30 -11.12 16 7 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 8 C 0.04 1.15 5.50 -17.51 -0.10 1.05 16 9 N -0.86 -25.64 13.67 55.49 0.76 -24.88 16 10 Si 0.94 21.66 29.55 -169.99 -5.02 16.63 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 C -0.08 -1.38 6.13 -100.19 -0.61 -1.99 16 15 C -0.08 -1.42 4.82 -26.85 -0.13 -1.55 16 16 C -0.13 -1.61 6.87 -25.01 -0.17 -1.78 16 17 C -0.12 -1.39 6.95 -24.67 -0.17 -1.56 16 18 C -0.09 -1.17 6.07 -26.31 -0.16 -1.33 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 20 H 0.08 1.58 7.68 -51.93 -0.40 1.18 16 21 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.08 1.52 7.66 -51.93 -0.40 1.12 16 24 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.88 6.88 -51.93 -0.36 0.52 16 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -32.74 256.78 -5.82 -38.56 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.93 Total: -0.79 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.05 Total: -11.41 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.76 Total: -24.88 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.45 Total: -21.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.74 -5.82 -38.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306539777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.980 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds