Wall clock time and date at job start Sun Mar 29 2020 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.46871 * 120.00441 * 2 1 4 4 O 1.21570 * 120.00505 * 179.97438 * 3 2 1 5 5 O 1.34817 * 119.99655 * 0.02562 * 3 2 1 6 6 C 1.34838 * 116.99683 * 180.02562 * 5 3 2 7 7 H 1.08000 * 119.99898 * 359.97438 * 6 5 3 8 8 C 1.38826 * 119.99734 * 179.97438 * 6 5 3 9 9 N 1.31412 * 119.99931 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47254 * 89.99805 * 10 8 6 12 12 H 1.48505 * 109.47405 * 210.00144 * 10 8 6 13 13 H 1.48510 * 109.46952 * 329.99795 * 10 8 6 14 14 C 1.33155 * 119.99530 * 179.97438 * 2 1 3 15 15 C 1.51446 * 126.33615 * 180.02562 * 14 2 1 16 16 C 1.54282 * 106.84905 * 180.33708 * 15 14 2 17 17 C 1.54987 * 103.74985 * 23.12444 * 16 15 14 18 18 C 1.51843 * 126.34605 * 359.97438 * 14 2 1 19 19 H 1.08998 * 109.47143 * 270.00196 * 1 2 3 20 20 H 1.09000 * 109.46720 * 30.00084 * 1 2 3 21 21 H 1.08995 * 109.47131 * 149.99910 * 1 2 3 22 22 H 0.97006 * 119.99761 * 180.02562 * 9 8 6 23 23 H 1.08996 * 109.99044 * 299.68401 * 15 14 2 24 24 H 1.09005 * 109.98620 * 60.99350 * 15 14 2 25 25 H 1.08996 * 110.57285 * 141.69135 * 16 15 14 26 26 H 1.09005 * 110.57234 * 264.55907 * 16 15 14 27 27 H 1.08999 * 110.83018 * 204.70408 * 17 16 15 28 28 H 1.09001 * 110.83046 * 81.12560 * 17 16 15 29 29 H 1.09004 * 110.43923 * 274.96951 * 18 14 2 30 30 H 1.09001 * 110.44013 * 37.36016 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2415 1.2719 0.0000 4 8 3.4572 1.2719 0.0005 5 8 1.5674 2.4394 0.0005 6 6 2.3019 3.5702 0.0000 7 1 3.3804 3.5136 -0.0005 8 6 1.6717 4.8072 -0.0001 9 7 0.3594 4.8760 -0.0001 10 14 2.6890 6.3738 -0.0002 11 1 2.9587 6.7889 -1.4002 12 1 1.9418 7.4494 0.6999 13 1 3.9756 6.1285 0.7000 14 6 2.1727 -1.1532 0.0005 15 6 3.6779 -1.3205 0.0011 16 6 3.9593 -2.8374 -0.0071 17 6 2.6658 -3.4488 -0.6031 18 6 1.5634 -2.5440 0.0017 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8899 -0.5138 22 1 -0.0810 5.7403 -0.0005 23 1 4.1046 -0.8577 -0.8887 24 1 4.1027 -0.8677 0.8971 25 1 4.8171 -3.0644 -0.6401 26 1 4.1233 -3.2021 1.0070 27 1 2.5403 -4.4818 -0.2790 28 1 2.6704 -3.3804 -1.6910 29 1 1.3300 -2.8565 1.0196 30 1 0.6668 -2.5673 -0.6177 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306539777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:53 Heat of formation + Delta-G solvation = -106.904406 kcal Electronic energy + Delta-G solvation = -13737.747155 eV Core-core repulsion = 11303.984139 eV Total energy + Delta-G solvation = -2433.763016 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.11250 -39.16383 -37.08463 -34.57066 -34.12909 -29.84485 -28.58559 -27.65084 -25.38713 -22.58662 -21.51277 -19.85707 -19.27843 -17.78636 -16.93149 -16.68952 -16.31040 -16.13903 -15.37700 -14.41911 -14.26598 -14.05923 -13.66805 -13.41571 -13.14990 -13.04153 -12.78697 -12.38435 -12.28225 -12.15350 -12.00351 -11.88463 -11.81619 -11.44460 -10.81261 -10.71638 -9.79058 -8.56428 -6.33710 0.32809 1.31462 1.38508 1.49471 2.11371 2.15952 2.78360 2.99220 3.63391 3.79178 4.14130 4.18518 4.28210 4.50842 4.50916 4.74699 4.80593 4.84927 4.93735 5.00656 5.08627 5.14140 5.17080 5.20323 5.23331 5.42029 5.52596 5.80880 5.82386 6.64972 6.88392 7.78053 8.64801 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.060267 B = 0.007447 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.486867 B = 3759.167978 C = 4173.048158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.176 4.176 3 C 0.426 3.574 4 O -0.581 6.581 5 O -0.239 6.239 6 C -0.422 4.422 7 H 0.079 0.921 8 C -0.005 4.005 9 N -0.901 5.901 10 Si 1.020 2.980 11 H -0.259 1.259 12 H -0.257 1.257 13 H -0.265 1.265 14 C -0.045 4.045 15 C -0.096 4.096 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.089 4.089 19 H 0.072 0.928 20 H 0.044 0.956 21 H 0.100 0.900 22 H 0.280 0.720 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -14.222 -0.199 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.177 4.177 3 C 0.277 3.723 4 O -0.481 6.481 5 O -0.147 6.147 6 C -0.498 4.498 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.538 5.538 10 Si 0.838 3.162 11 H -0.184 1.184 12 H -0.181 1.181 13 H -0.189 1.189 14 C -0.046 4.046 15 C -0.133 4.133 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.126 4.126 19 H 0.091 0.909 20 H 0.064 0.936 21 H 0.118 0.882 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.118 -14.056 -0.196 14.102 hybrid contribution 0.566 1.315 0.021 1.432 sum 1.685 -12.740 -0.175 12.853 Atomic orbital electron populations 1.20587 0.88617 1.03002 1.02731 1.20277 0.97500 0.88187 1.11696 1.22091 0.86518 0.86509 0.77221 1.90570 1.16426 1.88703 1.52419 1.83965 1.40076 1.13783 1.76873 1.21453 0.91447 0.82152 1.54770 0.90367 1.26584 0.97597 1.01665 0.94684 1.70068 1.09528 1.27568 1.46662 0.84609 0.77357 0.74649 0.79585 1.18354 1.18086 1.18930 1.23129 0.96711 0.94661 0.90079 1.21292 0.92440 0.98242 1.01366 1.22451 0.99087 0.91860 1.02280 1.22551 0.92717 0.99556 1.00424 1.21678 0.99335 0.88095 1.03454 0.90899 0.93635 0.88174 0.91106 0.92540 0.92576 0.90378 0.90113 0.87940 0.91067 0.87651 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.27 9.58 71.24 0.68 -2.59 16 2 C -0.18 -7.38 6.00 -18.75 -0.11 -7.49 16 3 C 0.43 23.69 7.81 70.08 0.55 24.24 16 4 O -0.58 -34.15 13.36 19.61 0.26 -33.89 16 5 O -0.24 -15.07 9.00 10.64 0.10 -14.98 16 6 C -0.42 -27.08 9.65 67.96 0.66 -26.43 16 7 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 8 C -0.01 -0.30 5.50 84.90 0.47 0.16 16 9 N -0.90 -54.98 13.67 21.64 0.30 -54.68 16 10 Si 1.02 45.01 29.55 68.60 2.03 47.04 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 C -0.04 -1.52 6.13 -16.99 -0.10 -1.62 16 15 C -0.10 -3.25 4.82 30.52 0.15 -3.11 16 16 C -0.12 -2.61 6.87 31.71 0.22 -2.39 16 17 C -0.12 -2.02 6.95 31.93 0.22 -1.80 16 18 C -0.09 -1.90 6.07 30.87 0.19 -1.71 16 19 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 20 H 0.04 1.88 7.68 -2.39 -0.02 1.86 16 21 H 0.10 2.60 6.59 -2.39 -0.02 2.58 16 22 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 23 H 0.06 2.19 7.66 -2.39 -0.02 2.17 16 24 H 0.06 2.16 7.69 -2.38 -0.02 2.14 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.10 1.74 6.88 -2.39 -0.02 1.72 16 Total: -1.00 -76.68 256.78 6.72 -69.97 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.13 Total: 9.28 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 2.91 Total: -22.74 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.30 Total: -54.68 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: 0.36 Total: -48.87 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -76.68 6.72 -69.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306539777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.937 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds