Wall clock time and date at job start Sun Mar 29 2020 22:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39924 * 119.99992 * 2 1 4 4 C 1.38717 * 120.07982 * 359.97438 * 3 2 1 5 5 C 1.38217 * 120.01563 * 180.23432 * 4 3 2 6 6 C 1.38532 * 120.17238 * 359.48838 * 5 4 3 7 7 F 1.35106 * 119.91908 * 180.27591 * 6 5 4 8 8 C 1.38352 * 120.16107 * 0.51612 * 6 5 4 9 9 C 1.38721 * 119.98543 * 359.74175 * 8 6 5 10 10 O 1.35792 * 120.09200 * 180.02562 * 9 8 6 11 11 C 1.34799 * 116.99817 * 354.40328 * 10 9 8 12 12 H 1.08000 * 120.00050 * 5.05775 * 11 10 9 13 13 C 1.38630 * 120.00053 * 185.05963 * 11 10 9 14 14 N 1.31584 * 119.99706 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00286 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46971 * 59.99964 * 15 13 11 17 17 H 1.48497 * 109.47446 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47294 * 300.00167 * 15 13 11 19 19 H 1.08992 * 109.47337 * 59.99629 * 1 2 3 20 20 H 1.08998 * 109.47454 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46798 * 299.99766 * 1 2 3 22 22 H 0.97001 * 119.99980 * 180.02562 * 2 1 3 23 23 H 1.07991 * 119.99390 * 359.96294 * 4 3 2 24 24 H 1.07994 * 119.91345 * 179.74909 * 5 4 3 25 25 H 1.08002 * 120.01074 * 179.76158 * 8 6 5 26 26 H 0.97001 * 119.99952 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1646 1.2118 0.0000 4 6 1.4727 2.4141 -0.0005 5 6 2.1651 3.6103 -0.0054 6 6 3.5504 3.6129 0.0009 7 9 4.2221 4.7852 0.0017 8 6 4.2479 2.4181 0.0013 9 6 3.5596 1.2136 0.0009 10 8 4.2420 0.0396 0.0019 11 6 5.5831 0.1111 -0.1139 12 1 6.0740 1.0731 -0.1197 13 6 6.3321 -1.0500 -0.2255 14 7 5.7339 -2.2220 -0.2190 15 14 8.1905 -0.9509 -0.3866 16 1 8.7554 -0.2730 0.8078 17 1 8.7522 -2.3216 -0.4904 18 1 8.5412 -0.1792 -1.6059 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.9500 -0.8401 -0.0004 23 1 0.3928 2.4155 -0.0016 24 1 1.6248 4.5453 -0.0099 25 1 5.3279 2.4230 0.0024 26 1 6.2579 -3.0345 -0.2974 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306548356.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:30 Heat of formation + Delta-G solvation = -64.704434 kcal Electronic energy + Delta-G solvation = -13530.307000 eV Core-core repulsion = 10909.487696 eV Total energy + Delta-G solvation = -2620.819304 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.64067 -40.86091 -38.29435 -35.92405 -34.26928 -30.93254 -30.10755 -27.33298 -26.42468 -23.40879 -22.56410 -20.01009 -19.34765 -17.82554 -17.27724 -16.92288 -16.47141 -15.97244 -15.55672 -15.51445 -15.09726 -14.93173 -14.60961 -13.81278 -13.60063 -13.15063 -12.92314 -12.84940 -12.43352 -12.20159 -12.00754 -11.51463 -10.80049 -10.72629 -9.43984 -8.47309 -8.03001 -6.10060 0.48437 0.61143 1.35575 1.44749 1.50129 2.16799 2.73772 2.77249 3.10387 3.33993 3.64640 4.02115 4.25276 4.41489 4.58147 4.77624 4.78738 4.95394 5.03006 5.12045 5.33479 5.43570 5.46742 5.96379 6.04603 6.56761 6.84408 6.98280 7.74823 8.74599 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.010998 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.928334 B = 2545.396079 C = 3529.716789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.758 5.758 3 C 0.147 3.853 4 C -0.136 4.136 5 C -0.164 4.164 6 C 0.064 3.936 7 F -0.155 7.155 8 C -0.247 4.247 9 C 0.077 3.923 10 O -0.216 6.216 11 C -0.412 4.412 12 H 0.093 0.907 13 C -0.016 4.016 14 N -0.913 5.913 15 Si 1.012 2.988 16 H -0.261 1.261 17 H -0.269 1.269 18 H -0.262 1.262 19 H 0.059 0.941 20 H 0.086 0.914 21 H 0.060 0.940 22 H 0.398 0.602 23 H 0.164 0.836 24 H 0.158 0.842 25 H 0.123 0.877 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 6.177 0.068 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.389 5.389 3 C 0.044 3.956 4 C -0.159 4.159 5 C -0.184 4.184 6 C 0.043 3.957 7 F -0.134 7.134 8 C -0.268 4.268 9 C 0.024 3.976 10 O -0.123 6.123 11 C -0.488 4.488 12 H 0.111 0.889 13 C -0.214 4.214 14 N -0.551 5.551 15 Si 0.832 3.168 16 H -0.185 1.185 17 H -0.193 1.193 18 H -0.186 1.186 19 H 0.078 0.922 20 H 0.105 0.895 21 H 0.078 0.922 22 H 0.231 0.769 23 H 0.182 0.818 24 H 0.176 0.824 25 H 0.140 0.860 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.911 5.793 0.074 9.805 hybrid contribution 1.453 -0.266 -0.058 1.478 sum -6.458 5.527 0.016 8.500 Atomic orbital electron populations 1.21685 0.78149 1.03531 1.01480 1.44489 1.06569 1.04617 1.83211 1.17528 0.87093 0.88922 1.02038 1.20429 1.00486 0.88316 1.06713 1.20825 0.90705 0.99903 1.06975 1.17340 0.90851 0.79652 1.07895 1.91382 1.81234 1.46059 1.94716 1.20859 1.00752 0.91443 1.13786 1.19127 0.91235 0.86474 1.00767 1.83852 1.20826 1.25511 1.82109 1.21654 0.79241 0.95290 1.52653 0.88936 1.26399 1.05529 0.93510 0.95958 1.70138 1.38364 0.98163 1.48456 0.84733 0.74116 0.78302 0.79648 1.18536 1.19339 1.18611 0.92247 0.89520 0.92171 0.76936 0.81814 0.82402 0.85975 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.25 9.95 127.77 1.27 3.52 15 2 N -0.76 -27.37 5.89 -360.25 -2.12 -29.49 15 3 C 0.15 5.96 6.67 38.27 0.26 6.21 15 4 C -0.14 -4.41 9.31 22.38 0.21 -4.20 15 5 C -0.16 -5.40 10.02 22.34 0.22 -5.18 15 6 C 0.06 2.54 7.29 22.37 0.16 2.70 15 7 F -0.15 -5.95 17.26 44.97 0.78 -5.18 15 8 C -0.25 -11.50 9.14 22.41 0.20 -11.30 15 9 C 0.08 3.78 6.67 22.69 0.15 3.93 15 10 O -0.22 -12.47 9.00 -22.89 -0.21 -12.67 15 11 C -0.41 -23.85 9.49 67.91 0.64 -23.21 15 12 H 0.09 5.07 5.21 -2.91 -0.02 5.06 15 13 C -0.02 -0.88 5.49 84.82 0.47 -0.42 15 14 N -0.91 -54.21 13.67 21.61 0.30 -53.91 15 15 Si 1.01 42.93 29.55 68.60 2.03 44.96 15 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 19 H 0.06 1.24 7.95 -2.39 -0.02 1.23 15 20 H 0.09 1.70 8.14 -2.39 -0.02 1.69 15 21 H 0.06 1.25 7.95 -2.38 -0.02 1.23 15 22 H 0.40 16.26 8.20 -92.71 -0.76 15.50 15 23 H 0.16 3.93 6.73 -2.92 -0.02 3.91 15 24 H 0.16 3.97 8.06 -2.91 -0.02 3.94 15 25 H 0.12 5.91 5.64 -2.91 -0.02 5.89 15 26 H 0.27 14.92 8.31 -92.71 -0.77 14.14 15 Total: -1.00 -66.33 236.91 4.82 -61.51 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.46 Total: 22.70 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.59 Total: -27.92 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.83 Total: -83.40 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.21 Total: -12.67 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.78 Total: -5.18 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.33 4.82 -61.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306548356.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.197 kcal (2) G-P(sol) polarization free energy of solvation -66.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds