Wall clock time and date at job start Sun Mar 29 2020 21:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86797 * 120.00283 * 2 1 4 4 H 1.48506 * 109.46773 * 269.99806 * 3 2 1 5 5 H 1.48500 * 109.47142 * 29.99519 * 3 2 1 6 6 H 1.48494 * 109.47088 * 149.99802 * 3 2 1 7 7 C 1.40051 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00064 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99902 * 5.21128 * 9 7 2 11 11 N 1.34771 * 120.00119 * 185.21496 * 9 7 2 12 12 C 1.47234 * 121.71620 * 174.88566 * 11 9 7 13 13 C 1.53098 * 109.39595 * 131.44175 * 12 11 9 14 14 N 1.48829 * 109.74765 * 48.67085 * 13 12 11 15 15 C 1.48072 * 110.24744 * 48.63472 * 14 13 12 16 16 C 1.54166 * 106.82662 * 270.52935 * 15 14 13 17 17 C 1.48378 * 121.71721 * 354.86163 * 11 9 7 18 18 H 1.08999 * 114.03181 * 5.21138 * 17 11 9 19 19 C 1.48799 * 107.79321 * 294.22502 * 14 13 12 20 20 H 0.97000 * 119.99683 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.48482 * 251.41982 * 12 11 9 22 22 H 1.09003 * 109.48602 * 11.44587 * 12 11 9 23 23 H 1.09001 * 109.41950 * 168.54742 * 13 12 11 24 24 H 1.09007 * 109.41872 * 288.41268 * 13 12 11 25 25 H 1.08998 * 109.99027 * 29.89466 * 15 14 13 26 26 H 1.09005 * 109.98425 * 151.16817 * 15 14 13 27 27 H 1.09001 * 110.40583 * 241.94198 * 16 15 14 28 28 H 1.08991 * 110.44390 * 119.45906 * 16 15 14 29 29 H 1.09003 * 110.98489 * 316.67494 * 19 14 13 30 30 H 1.09002 * 110.97925 * 192.92387 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4884 2.0463 -1.4002 5 1 1.4383 2.6527 0.6999 6 1 3.5383 1.4400 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0620 -2.4827 -0.0956 11 7 1.9446 -3.6453 0.1071 12 6 1.2422 -4.9341 0.2226 13 6 1.8416 -5.9307 -0.7731 14 7 3.3256 -5.9234 -0.6604 15 6 3.7323 -6.0355 0.7590 16 6 3.8253 -4.5992 1.3113 17 6 3.4276 -3.6948 0.1137 18 1 3.9044 -2.7146 0.1162 19 6 3.8086 -4.5871 -1.1022 20 1 -0.4850 0.8401 -0.0004 21 1 1.3549 -5.3201 1.2357 22 1 0.1840 -4.7924 0.0031 23 1 1.4693 -6.9313 -0.5530 24 1 1.5509 -5.6506 -1.7857 25 1 2.9865 -6.6019 1.3166 26 1 4.7029 -6.5262 0.8307 27 1 4.8440 -4.3803 1.6313 28 1 3.1283 -4.4634 2.1382 29 1 3.2880 -4.2621 -2.0030 30 1 4.8873 -4.5940 -1.2583 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306586547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:07 Heat of formation + Delta-G solvation = -39.674062 kcal Electronic energy + Delta-G solvation = -14548.105048 eV Core-core repulsion = 12149.550109 eV Total energy + Delta-G solvation = -2398.554938 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56927 -38.60408 -34.80906 -34.11411 -33.00950 -30.10948 -28.76819 -27.24576 -24.37455 -22.50126 -21.64079 -20.46296 -18.62361 -17.85136 -16.89754 -16.40284 -15.90265 -15.53901 -15.37573 -14.77506 -14.40391 -13.95358 -13.59348 -13.42422 -13.08915 -12.79961 -12.69549 -12.38638 -12.15599 -12.05001 -12.01490 -11.79321 -11.59631 -10.96599 -10.04709 -9.82087 -8.86387 -8.32295 -6.87117 1.37893 1.39433 1.54664 2.20546 2.41796 2.67638 3.06955 3.51652 3.80884 3.94566 4.01537 4.12522 4.22001 4.36823 4.51772 4.68820 4.71564 4.81242 4.91953 4.95187 5.00539 5.07705 5.21717 5.33482 5.70913 5.78264 5.92553 6.06450 6.34997 6.84337 7.37240 8.42595 8.64022 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048244 B = 0.010354 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.239951 B = 2703.653890 C = 3025.436423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.541 3.459 10 O -0.636 6.636 11 N -0.644 5.644 12 C 0.088 3.912 13 C 0.034 3.966 14 N -0.497 5.497 15 C 0.034 3.966 16 C -0.154 4.154 17 C 0.106 3.894 18 H 0.111 0.889 19 C 0.022 3.978 20 H 0.274 0.726 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 -7.629 1.142 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.602 4.602 8 H 0.110 0.890 9 C 0.347 3.653 10 O -0.524 6.524 11 N -0.381 5.381 12 C -0.037 4.037 13 C -0.096 4.096 14 N -0.219 5.219 15 C -0.094 4.094 16 C -0.194 4.194 17 C 0.001 3.999 18 H 0.128 0.872 19 C -0.107 4.107 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.123 0.877 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.402 -8.054 0.754 13.177 hybrid contribution -0.802 1.490 0.511 1.767 sum 9.600 -6.564 1.265 11.698 Atomic orbital electron populations 1.70200 1.09650 1.28930 1.36630 1.27028 0.95504 1.05050 0.91165 0.85033 0.78907 0.75003 0.79482 1.18603 1.19916 1.16814 1.21444 0.94713 0.89635 1.54425 0.88981 1.18692 0.86498 0.84202 0.75883 1.90536 1.16799 1.87417 1.57601 1.48656 1.06333 1.05034 1.78051 1.21831 0.97252 0.85392 0.99199 1.22988 0.89079 0.98972 0.98531 1.66552 1.08630 1.28693 1.17978 1.23110 1.02715 0.95763 0.87844 1.23228 1.02750 0.95953 0.97433 1.23506 0.80377 1.00221 0.95772 0.87152 1.23886 1.01994 0.88144 0.96720 0.91621 0.92434 0.93174 0.87684 0.92029 0.90925 0.87631 0.88153 0.92787 0.92243 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.19 11.84 21.84 0.26 -50.93 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 40.86 29.56 68.60 2.03 42.89 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.57 -32.15 8.95 24.83 0.22 -31.93 16 8 H 0.09 4.64 5.81 -2.91 -0.02 4.62 16 9 C 0.54 32.17 7.66 86.36 0.66 32.83 16 10 O -0.64 -43.92 14.58 -4.31 -0.06 -43.98 16 11 N -0.64 -29.91 2.71 -787.30 -2.14 -32.05 16 12 C 0.09 3.56 5.77 86.27 0.50 4.05 16 13 C 0.03 1.08 5.97 85.96 0.51 1.59 16 14 N -0.50 -14.27 6.01 -874.66 -5.26 -19.53 16 15 C 0.03 0.82 6.23 86.47 0.54 1.36 16 16 C -0.15 -4.34 5.97 31.76 0.19 -4.15 16 17 C 0.11 3.80 4.30 46.28 0.20 4.00 16 18 H 0.11 4.10 5.86 -2.39 -0.01 4.08 16 19 C 0.02 0.68 6.51 86.81 0.57 1.24 16 20 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 21 H 0.06 2.13 6.33 -2.39 -0.02 2.12 16 22 H 0.05 2.36 7.13 -2.39 -0.02 2.34 16 23 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.06 2.13 7.89 -2.38 -0.02 2.11 16 25 H 0.07 1.71 7.10 -2.39 -0.02 1.69 16 26 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.74 7.53 -2.39 -0.02 1.72 16 29 H 0.06 2.09 7.81 -2.39 -0.02 2.07 16 30 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -75.58 239.21 -0.18 -75.75 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.14 Total: 16.84 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 3.86 Total: 11.01 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -7.14 Total: -102.51 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -0.06 Total: -43.98 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -75.58 -0.18 -75.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306586547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.077 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds